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Orthologous genes in OrthoFinder**

Species Gene Description
 cit-r.1   102629983   phenylalanine--tRNA ligase alpha subunit, cytoplasmic 
 ath-u.5   AT4G39280   phenylalanyl-tRNA synthetase, putative / phenylalanine-tRNA ligase 
 bra-r.6   103842499   phenylalanine--tRNA ligase alpha subunit, cytoplasmic 
 bra-r.6   103864291   phenylalanine--tRNA ligase alpha subunit, cytoplasmic-like 
 ghi-r.1   107949104   phenylalanine--tRNA ligase alpha subunit, cytoplasmic 
 ghi-r.1   107898564   phenylalanine--tRNA ligase alpha subunit, cytoplasmic 
 bna-r.1   106365964   phenylalanine--tRNA ligase alpha subunit, cytoplasmic-like 
 bna-r.1   106420610   phenylalanine--tRNA ligase alpha subunit, cytoplasmic 
 bna-r.1   106415123   phenylalanine--tRNA ligase alpha subunit, cytoplasmic 
 gma-u.5   100777795   phenylalanine--tRNA ligase alpha subunit, cytoplasmic 
 gma-u.5   100792325   phenylalanine--tRNA ligase alpha subunit, cytoplasmic 
 gma-u.5   100786433   phenylalanine--tRNA ligase alpha subunit, cytoplasmic 
 vvi-u.5   100853559   phenylalanine--tRNA ligase alpha subunit, cytoplasmic 
 ppo-u.5   7469990   phenylalanine--tRNA ligase alpha subunit, cytoplasmic 
 ppo-u.5   7456375   phenylalanine--tRNA ligase alpha subunit, cytoplasmic 
 mtr-u.5   11417135   phenylalanine--tRNA ligase alpha subunit, cytoplasmic 
 sly-u.5   101268820   phenylalanine--tRNA ligase alpha subunit, cytoplasmic-like 
 sly-u.5   101266074   phenylalanine--tRNA ligase alpha subunit, cytoplasmic 
 sot-r.1   102592959   phenylalanine--tRNA ligase alpha subunit, cytoplasmic-like 
 sot-r.1   102598587   phenylalanine--tRNA ligase alpha subunit, cytoplasmic-like 
 nta-r.1   107799344   phenylalanine--tRNA ligase alpha subunit, cytoplasmic 
 nta-r.1   107789991   phenylalanine--tRNA ligase alpha subunit, cytoplasmic 
 nta-r.1   107814720   phenylalanine--tRNA ligase alpha subunit, cytoplasmic-like 
 osa-u.5   4348566   phenylalanine--tRNA ligase alpha subunit, cytoplasmic 
 zma-u.5   100194117   uncharacterized LOC100194117 
 tae-r.2   123103747   phenylalanine--tRNA ligase alpha subunit, cytoplasmic 
 tae-r.2   123111963   phenylalanine--tRNA ligase alpha subunit, cytoplasmic 
 tae-r.2   123121530   phenylalanine--tRNA ligase alpha subunit, cytoplasmic 
 hvu-r.1   123397175   phenylalanine--tRNA ligase alpha subunit, cytoplasmic 
 sbi-r.1   8078912   phenylalanine--tRNA ligase alpha subunit, cytoplasmic 
 bdi-r.1   100837387   phenylalanine--tRNA ligase alpha subunit, cytoplasmic 
 cre-r.1   CHLRE_09g389430v5   phenylalanyl-tRNA synthetase alpha chain 

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Top 50 coexpressed genes to 102629983 (cit-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102629983 (cit-r.1 coexpression data)

CoexMap"102629983"


citLOC102629983 | Entrez gene ID : 102629983    
Species cit ath bra ghi bna gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 1 1 2 2 3 3 1 2 1 2 2 3 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cit00970 [list] [network] Aminoacyl-tRNA biosynthesis (466 genes)
GO BP
GO:0006432 [list] [network] phenylalanyl-tRNA aminoacylation  (3 genes)  IEA  
GO CC
GO:0009328 [list] [network] phenylalanine-tRNA ligase complex  (2 genes)  IEA  
GO:0005829 [list] [network] cytosol  (791 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (4272 genes)  IEA  
GO MF
GO:0004826 [list] [network] phenylalanine-tRNA ligase activity  (3 genes)  IEA  
GO:0000049 [list] [network] tRNA binding  (24 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1864 genes)  IEA  
Protein XP_052287837.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 4  (predict for XP_052287837.1)
Subcellular
localization
TargetP
other 9  (predict for XP_052287837.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cit-r.1
for
102629983
ath-u.5
for
AT4G39280
bra-r.6
for
103842499
bra-r.6
for
103864291
ghi-r.1
for
107949104
ghi-r.1
for
107898564
bna-r.1
for
106365964
bna-r.1
for
106420610
bna-r.1
for
106415123
gma-u.5
for
100777795
gma-u.5
for
100792325
gma-u.5
for
100786433
vvi-u.5
for
100853559
ppo-u.5
for
7469990
ppo-u.5
for
7456375
mtr-u.5
for
11417135
sly-u.5
for
101268820
sly-u.5
for
101266074
sot-r.1
for
102592959
sot-r.1
for
102598587
nta-r.1
for
107799344
nta-r.1
for
107789991
nta-r.1
for
107814720
osa-u.5
for
4348566
zma-u.5
for
100194117
tae-r.2
for
123103747
tae-r.2
for
123111963
tae-r.2
for
123121530
hvu-r.1
for
123397175
sbi-r.1
for
8078912
bdi-r.1
for
100837387
cre-r.1
for
CHLRE_09g389430v5


Ortholog ID: 5569
Species cit ath bra bra ghi ghi bna bna bna gma gma gma vvi ppo ppo mtr sly sly sot sot nta nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC102629983 AT4G39280 LOC103842499 LOC103864291 LOC107949104 LOC107898564 LOC106365964 LOC106415123 LOC106446377 LOC100777795 LOC100792325 LOC100786433 LOC100853559 LOC7469990 LOC7456375 LOC11417135 LOC101268820 LOC101266074 LOC102592959 LOC102598587 LOC107799344 LOC107814720 LOC107787429 LOC4348566 LOC100194117 LOC123103747 LOC123111963 LOC123121530 LOC123397175 LOC8078912 LOC100837387 CHLRE_09g389430v5
Function* phenylalanine--tRNA ligase alpha subunit, cytoplasmic phenylalanyl-tRNA synthetase, putative / phenylalanine-tRNA ligase phenylalanine--tRNA ligase alpha subunit, cytoplasmic phenylalanine--tRNA ligase alpha subunit, cytoplasmic-like phenylalanine--tRNA ligase alpha subunit, cytoplasmic phenylalanine--tRNA ligase alpha subunit, cytoplasmic phenylalanine--tRNA ligase alpha subunit, cytoplasmic-like phenylalanine--tRNA ligase alpha subunit, cytoplasmic phenylalanine--tRNA ligase alpha subunit, cytoplasmic phenylalanine--tRNA ligase alpha subunit, cytoplasmic phenylalanine--tRNA ligase alpha subunit, cytoplasmic phenylalanine--tRNA ligase alpha subunit, cytoplasmic phenylalanine--tRNA ligase alpha subunit, cytoplasmic phenylalanine--tRNA ligase alpha subunit, cytoplasmic phenylalanine--tRNA ligase alpha subunit, cytoplasmic phenylalanine--tRNA ligase alpha subunit, cytoplasmic phenylalanine--tRNA ligase alpha subunit, cytoplasmic-like phenylalanine--tRNA ligase alpha subunit, cytoplasmic phenylalanine--tRNA ligase alpha subunit, cytoplasmic-like phenylalanine--tRNA ligase alpha subunit, cytoplasmic-like phenylalanine--tRNA ligase alpha subunit, cytoplasmic phenylalanine--tRNA ligase alpha subunit, cytoplasmic-like phenylalanine--tRNA ligase alpha subunit, cytoplasmic phenylalanine--tRNA ligase alpha subunit, cytoplasmic uncharacterized LOC100194117 phenylalanine--tRNA ligase alpha subunit, cytoplasmic phenylalanine--tRNA ligase alpha subunit, cytoplasmic phenylalanine--tRNA ligase alpha subunit, cytoplasmic phenylalanine--tRNA ligase alpha subunit, cytoplasmic phenylalanine--tRNA ligase alpha subunit, cytoplasmic phenylalanine--tRNA ligase alpha subunit, cytoplasmic phenylalanyl-tRNA synthetase alpha chain
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00020 Citrate cycle (TCA cycle) 4
cit01200 Carbon metabolism 4
cit03050 Proteasome 3
cit01210 2-Oxocarboxylic acid metabolism 2
cit01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 7
ath03040 Spliceosome 2
ath03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 5
ghi03060 Protein export 2
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 5
ghi03060 Protein export 2
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 9
bna00450 Selenocompound metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 9
bna00450 Selenocompound metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 8
bna00450 Selenocompound metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 18
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 16
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 3
vvi03013 Nucleocytoplasmic transport 2
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00510 N-Glycan biosynthesis 5
ppo00513 Various types of N-glycan biosynthesis 5
ppo04141 Protein processing in endoplasmic reticulum 5
ppo00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
ppo00970 Aminoacyl-tRNA biosynthesis 3
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 7
sly00510 N-Glycan biosynthesis 6
sly00513 Various types of N-glycan biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 9
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 3
sot01240 Biosynthesis of cofactors 3
sot00230 Purine metabolism 2
sot00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 4
nta03008 Ribosome biogenesis in eukaryotes 2
nta03020 RNA polymerase 2
nta00040 Pentose and glucuronate interconversions 2
nta00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 4
nta00040 Pentose and glucuronate interconversions 2
nta00052 Galactose metabolism 2
nta00500 Starch and sucrose metabolism 2
nta00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 4
nta03008 Ribosome biogenesis in eukaryotes 2
nta03020 RNA polymerase 2
nta00040 Pentose and glucuronate interconversions 2
nta00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 13
osa04120 Ubiquitin mediated proteolysis 2
osa00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 5
sbi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 4
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00970 Aminoacyl-tRNA biosynthesis 6
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102629983 830084 103842499 103864291 107949104 107898564 106365964 106415123 106446377 100777795 100792325 100786433 100853559 7469990 7456375 11417135 101268820 101266074 102592959 102598587 107799344 107814720 107787429 4348566 100194117 123103747 123111963 123121530 123397175 8078912 100837387 5720611
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