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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7469990   phenylalanine--tRNA ligase alpha subunit, cytoplasmic 
 ppo-r.4   7469990   phenylalanine--tRNA ligase alpha subunit, cytoplasmic 
 ppo-m.4   7469990   phenylalanine--tRNA ligase alpha subunit, cytoplasmic 
 ppo-u.5   7456375   phenylalanine--tRNA ligase alpha subunit, cytoplasmic 
 gma-u.5   100786433   phenylalanine--tRNA ligase alpha subunit, cytoplasmic 
 gma-u.5   100777795   phenylalanine--tRNA ligase alpha subunit, cytoplasmic 
 gma-u.5   100792325   phenylalanine--tRNA ligase alpha subunit, cytoplasmic 
 mtr-u.5   11417135   phenylalanine--tRNA ligase alpha subunit, cytoplasmic 
 ath-u.5   AT4G39280   phenylalanyl-tRNA synthetase, putative / phenylalanine-tRNA ligase 
 vvi-u.5   100853559   phenylalanine--tRNA ligase alpha subunit, cytoplasmic 
 sly-u.5   101268820   phenylalanine--tRNA ligase alpha subunit, cytoplasmic-like 
 sly-u.5   101266074   phenylalanine--tRNA ligase alpha subunit, cytoplasmic 
 osa-u.5   4348566   phenylalanine--tRNA ligase alpha subunit, cytoplasmic 
 zma-u.5   100194117   uncharacterized LOC100194117 

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Top 50 coexpressed genes to 7469990 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7469990 (ppo-u.5 coexpression data)

CoexMap"7469990"


ppoLOC7469990 | Entrez gene ID : 7469990    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 3 1 1 1 2 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00970 [list] [network] Aminoacyl-tRNA biosynthesis (96 genes)
GO BP
GO:0006432 [list] [network] phenylalanyl-tRNA aminoacylation  (5 genes)  IEA  
GO CC
GO:0009328 [list] [network] phenylalanine-tRNA ligase complex  (4 genes)  IEA  
GO:0005829 [list] [network] cytosol  (1141 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (6111 genes)  IEA  
GO MF
GO:0004826 [list] [network] phenylalanine-tRNA ligase activity  (5 genes)  IEA  
GO:0000049 [list] [network] tRNA binding  (34 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2559 genes)  IEA  
Protein XP_002305428.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 4,  nucl 2,  cyto_pero 2,  cyto_E.R. 2,  cyto_plas 2  (predict for XP_002305428.1)
Subcellular
localization
TargetP
other 9  (predict for XP_002305428.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7469990

.
ppo-r.4
for
7469990

.
ppo-m.4
for
7469990

.
ppo-u.5
for
7456375

.
gma-u.5
for
100786433

.
gma-u.5
for
100777795

.
gma-u.5
for
100792325

.
mtr-u.5
for
11417135

.
ath-u.5
for
AT4G39280

.
vvi-u.5
for
100853559

.
sly-u.5
for
101268820

.
sly-u.5
for
101266074

.
osa-u.5
for
4348566

.
zma-u.5
for
100194117

.


Ortholog ID: 5569
Species ath gma gma sly sly osa zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot sot cit bdi nta nta
Symbol AT4G39280 LOC100786433 LOC100792325 LOC101268820 LOC101266074 LOC4348566 LOC100194117 LOC103842499 LOC103864291 LOC100853559 LOC7456375 LOC7469990 LOC11417135 LOC123103747 LOC123111963 LOC123397175 LOC107949104 LOC107898564 LOC106365964 LOC106415123 CHLRE_09g389430v5 LOC8078912 LOC102598587 LOC102592959 LOC102629983 LOC100837387 LOC107799344 LOC107814720
Function* phenylalanyl-tRNA synthetase, putative / phenylalanine-tRNA ligase phenylalanine--tRNA ligase alpha subunit, cytoplasmic phenylalanine--tRNA ligase alpha subunit, cytoplasmic phenylalanine--tRNA ligase alpha subunit, cytoplasmic-like phenylalanine--tRNA ligase alpha subunit, cytoplasmic phenylalanine--tRNA ligase alpha subunit, cytoplasmic uncharacterized LOC100194117 phenylalanine--tRNA ligase alpha subunit, cytoplasmic phenylalanine--tRNA ligase alpha subunit, cytoplasmic-like phenylalanine--tRNA ligase alpha subunit, cytoplasmic phenylalanine--tRNA ligase alpha subunit, cytoplasmic phenylalanine--tRNA ligase alpha subunit, cytoplasmic phenylalanine--tRNA ligase alpha subunit, cytoplasmic phenylalanine--tRNA ligase alpha subunit, cytoplasmic phenylalanine--tRNA ligase alpha subunit, cytoplasmic phenylalanine--tRNA ligase alpha subunit, cytoplasmic phenylalanine--tRNA ligase alpha subunit, cytoplasmic phenylalanine--tRNA ligase alpha subunit, cytoplasmic phenylalanine--tRNA ligase alpha subunit, cytoplasmic-like phenylalanine--tRNA ligase alpha subunit, cytoplasmic phenylalanyl-tRNA synthetase alpha chain phenylalanine--tRNA ligase alpha subunit, cytoplasmic phenylalanine--tRNA ligase alpha subunit, cytoplasmic-like phenylalanine--tRNA ligase alpha subunit, cytoplasmic-like phenylalanine--tRNA ligase alpha subunit, cytoplasmic phenylalanine--tRNA ligase alpha subunit, cytoplasmic phenylalanine--tRNA ligase alpha subunit, cytoplasmic phenylalanine--tRNA ligase alpha subunit, cytoplasmic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 7
ath03040 Spliceosome 2
ath03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 16
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 7
sly00510 N-Glycan biosynthesis 6
sly00513 Various types of N-glycan biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 9
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 13
osa04120 Ubiquitin mediated proteolysis 2
osa00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 3
vvi03013 Nucleocytoplasmic transport 2
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
ppo00970 Aminoacyl-tRNA biosynthesis 3
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00510 N-Glycan biosynthesis 5
ppo00513 Various types of N-glycan biosynthesis 5
ppo04141 Protein processing in endoplasmic reticulum 5
ppo00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 5
ghi03060 Protein export 2
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 5
ghi03060 Protein export 2
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 9
bna00450 Selenocompound metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 9
bna00450 Selenocompound metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00970 Aminoacyl-tRNA biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 5
sbi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 3
sot01240 Biosynthesis of cofactors 3
sot00230 Purine metabolism 2
sot00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00020 Citrate cycle (TCA cycle) 4
cit01200 Carbon metabolism 4
cit03050 Proteasome 3
cit01210 2-Oxocarboxylic acid metabolism 2
cit01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 4
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 4
nta03008 Ribosome biogenesis in eukaryotes 2
nta03020 RNA polymerase 2
nta00040 Pentose and glucuronate interconversions 2
nta00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 4
nta00040 Pentose and glucuronate interconversions 2
nta00052 Galactose metabolism 2
nta00500 Starch and sucrose metabolism 2
nta00520 Amino sugar and nucleotide sugar metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830084 100786433 100792325 101268820 101266074 4348566 100194117 103842499 103864291 100853559 7456375 7469990 11417135 123103747 123111963 123397175 107949104 107898564 106365964 106415123 5720611 8078912 102598587 102592959 102629983 100837387 107799344 107814720
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