ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-u.5	103633605	symplekin
zma-r.6	103633605	symplekin
zma-m.5	103633605	symplekin
zma-u.5	103651305	uncharacterized LOC103651305
sbi-r.1	8077525	symplekin
sbi-r.1	8073942	uncharacterized LOC8073942
sbi-r.1	8063103	uncharacterized LOC8063103
osa-u.5	4323885	uncharacterized LOC4323885
osa-u.5	4344390	uncharacterized LOC4344390
tae-r.2	123043511	symplekin
tae-r.2	123061806	uncharacterized LOC123061806
tae-r.2	123051380	symplekin
hvu-r.1	123424594	uncharacterized LOC123424594
hvu-r.1	123444181	uncharacterized LOC123444181
bdi-r.1	100827067	symplekin
bdi-r.1	100836703	symplekin
ath-u.5	ESP4	HEAT repeat-containing protein
ath-u.5	AT1G27570	phosphatidylinositol 3- and 4-kinase family protein
ath-u.5	AT1G27595	symplekin
gma-u.5	100810420	uncharacterized LOC100810420
gma-u.5	100789876	uncharacterized LOC100789876
gma-u.5	100779360	uncharacterized LOC100779360
sly-u.5	101252517	uncharacterized LOC101252517
sly-u.5	101249356	uncharacterized LOC101249356
bra-r.6	103839032	uncharacterized LOC103839032
bra-r.6	103850419	symplekin
bra-r.6	103835387	uncharacterized LOC103835387
vvi-u.5	100262578	uncharacterized LOC100262578
vvi-u.5	100266091	uncharacterized LOC100266091
ppo-u.5	7466073	uncharacterized LOC7466073
ppo-u.5	7467209	uncharacterized LOC7467209
mtr-u.5	25491448	symplekin
mtr-u.5	25490161	uncharacterized LOC25490161
ghi-r.1	107958059	symplekin
ghi-r.1	107922126	uncharacterized LOC107922126
bna-r.1	125574790	uncharacterized LOC125574790
bna-r.1	BNAA09G27860D	uncharacterized BNAA09G27860D
bna-r.1	106367907	symplekin
sot-r.1	102603942	uncharacterized LOC102603942
sot-r.1	102595517	uncharacterized LOC102595517
cit-r.1	102622533	uncharacterized LOC102622533
cit-r.1	102608920	uncharacterized LOC102608920
nta-r.1	107818596	uncharacterized LOC107818596
nta-r.1	107816280	uncharacterized LOC107816280
nta-r.1	107787592	uncharacterized LOC107787592
cre-r.1	CHLRE_02g099200v5	uncharacterized protein

Top 50 coexpressed genes to 103633605 (zma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 103633605 (zma-u.5 coexpression data)

CoexMap"103633605"

[Cytoscape]

Annotation

functional annotation

KEGG

zma03015 [list] [network] mRNA surveillance pathway (165 genes)

GO BP

GO CC

GO MF

Protein

XP_008653537.1 [sequence] [blastp]
XP_008653538.1 [sequence] [blastp]
XP_008653539.1 [sequence] [blastp]
XP_020396488.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 2, mito 2, chlo_mito 2, nucl 1, E.R. 1, cysk_nucl 1, mito_plas 1	(predict for XP_008653537.1)
chlo 2, mito 2, chlo_mito 2, nucl 1, E.R. 1, cysk_nucl 1, mito_plas 1	(predict for XP_008653538.1)
chlo 2, mito 2, chlo_mito 2, nucl 1, E.R. 1, cysk_nucl 1, mito_plas 1	(predict for XP_008653539.1)
chlo 9, nucl 1, mito 1	(predict for XP_020396488.1)

Subcellular
localization
TargetP

chlo 5, mito 3	(predict for XP_008653537.1)
chlo 5, mito 3	(predict for XP_008653538.1)
chlo 5, mito 3	(predict for XP_008653539.1)
scret 3	(predict for XP_020396488.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 103633605	zma-r.6 for 103633605	zma-m.5 for 103633605	zma-u.5 for 103651305	sbi-r.1 for 8077525	sbi-r.1 for 8073942	sbi-r.1 for 8063103	osa-u.5 for 4323885	osa-u.5 for 4344390	tae-r.2 for 123043511	tae-r.2 for 123061806	tae-r.2 for 123051380	hvu-r.1 for 123424594	hvu-r.1 for 123444181	bdi-r.1 for 100827067	bdi-r.1 for 100836703	ath-u.5 for ESP4	ath-u.5 for AT1G27570	ath-u.5 for AT1G27595	gma-u.5 for 100810420	gma-u.5 for 100789876	gma-u.5 for 100779360	sly-u.5 for 101252517	sly-u.5 for 101249356	bra-r.6 for 103839032	bra-r.6 for 103850419	bra-r.6 for 103835387	vvi-u.5 for 100262578	vvi-u.5 for 100266091	ppo-u.5 for 7466073	ppo-u.5 for 7467209	mtr-u.5 for 25491448	mtr-u.5 for 25490161	ghi-r.1 for 107958059	ghi-r.1 for 107922126	bna-r.1 for 125574790	bna-r.1 for BNAA09G27860D	bna-r.1 for 106367907	sot-r.1 for 102603942	sot-r.1 for 102595517	cit-r.1 for 102622533	cit-r.1 for 102608920	nta-r.1 for 107818596	nta-r.1 for 107816280	nta-r.1 for 107787592	cre-r.1 for CHLRE_02g099200v5

Ortholog

Ortholog ID: 3041

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

ESP4

Function^*

symplekin

uncharacterized LOC103651305

symplekin

uncharacterized LOC8073942

uncharacterized LOC8063103

uncharacterized LOC4323885

uncharacterized LOC4344390

uncharacterized LOC123061806

symplekin

uncharacterized LOC123070494

uncharacterized LOC123424594

uncharacterized LOC123444181

symplekin

HEAT repeat-containing protein

phosphatidylinositol 3- and 4-kinase family protein

symplekin

uncharacterized LOC100789876

uncharacterized LOC100779360

uncharacterized LOC100776979

uncharacterized LOC101252517

uncharacterized LOC101249356

uncharacterized LOC103839032

symplekin

uncharacterized LOC103835387

uncharacterized LOC100262578

uncharacterized LOC100266091

uncharacterized LOC7466073

uncharacterized LOC7467209

symplekin

uncharacterized LOC25490161

symplekin

uncharacterized LOC107922126

symplekin

uncharacterized LOC125574790

uncharacterized BNAA09G27860D

uncharacterized BNAC05G21340D

uncharacterized LOC102603942

uncharacterized LOC102595517

uncharacterized LOC102622533

uncharacterized LOC102608920

uncharacterized LOC107818596

uncharacterized LOC107816280

uncharacterized LOC107787592

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	4
zma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03082	ATP-dependent chromatin remodeling	2
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	2
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	6
tae03013	Nucleocytoplasmic transport	3
tae04136	Autophagy - other	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	6
tae03013	Nucleocytoplasmic transport	3
tae03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03015	mRNA surveillance pathway	4
hvu03082	ATP-dependent chromatin remodeling	2
hvu03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03013	Nucleocytoplasmic transport	2
ath03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00970	Aminoacyl-tRNA biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	4
gma03018	RNA degradation	2
gma03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	4
gma03082	ATP-dependent chromatin remodeling	3
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	4
gma03082	ATP-dependent chromatin remodeling	3
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03015	mRNA surveillance pathway	2
sly03018	RNA degradation	2
sly03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03015	mRNA surveillance pathway	2
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03013	Nucleocytoplasmic transport	3
bra03040	Spliceosome	2
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03015	mRNA surveillance pathway	5
vvi03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03082	ATP-dependent chromatin remodeling	3
ppo03083	Polycomb repressive complex	2
ppo03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	4
mtr03015	mRNA surveillance pathway	3
mtr04120	Ubiquitin mediated proteolysis	2
mtr03020	RNA polymerase	2
mtr03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	2
mtr04120	Ubiquitin mediated proteolysis	2
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	2
ghi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	2
ghi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03250	Viral life cycle - HIV-1	2
sot03015	mRNA surveillance pathway	2
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04146	Peroxisome	2
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	2
nta03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	6
nta03018	RNA degradation	2
nta03015	mRNA surveillance pathway	2

Expression

Expression pattern

Entrez Gene ID^*

103633605

103651305

8077525

8073942

8063103

4323885

4344390

123061806

123051380

123070494

123424594

123444181

100827067

100836703

831597

839648

839651

100789876

100779360

100776979

101252517

101249356

103839032

103850419

103835387

100262578

100266091

7466073

7467209

25491448

25490161

107958059

107922126

107891552

125574790

106367313

106388523

102603942

102595517

102622533

102608920

107818596

107816280

107787592

66052405

The preparation time of this page was 0.4 [sec].


Species	zma	sbi	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	4	3	2	3	2	2	3	3	2	3	2	2	2	2	3	2	2	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 103633605 (zma-u.5 coexpression data)

Top 50 enrichment test to 103633605 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**