ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_02g099200v5	uncharacterized protein
ath-u.5	ESP4	HEAT repeat-containing protein
ath-u.5	AT1G27570	phosphatidylinositol 3- and 4-kinase family protein
ath-u.5	AT1G27595	symplekin
gma-u.5	100779360	uncharacterized LOC100779360
gma-u.5	100776979	uncharacterized LOC100776979
gma-u.5	100810420	uncharacterized LOC100810420
sly-u.5	101249356	uncharacterized LOC101249356
sly-u.5	101252517	uncharacterized LOC101252517
osa-u.5	4323885	uncharacterized LOC4323885
osa-u.5	4344390	uncharacterized LOC4344390
zma-u.5	103633605	symplekin
zma-u.5	103651305	uncharacterized LOC103651305
bra-r.6	103850419	symplekin
bra-r.6	103839032	uncharacterized LOC103839032
bra-r.6	103835387	uncharacterized LOC103835387
vvi-u.5	100262578	uncharacterized LOC100262578
vvi-u.5	100266091	uncharacterized LOC100266091
ppo-u.5	7466073	uncharacterized LOC7466073
ppo-u.5	7467209	uncharacterized LOC7467209
mtr-u.5	25490161	uncharacterized LOC25490161
mtr-u.5	25491448	symplekin
tae-r.2	123061806	uncharacterized LOC123061806
tae-r.2	123043511	symplekin
hvu-r.1	123424594	uncharacterized LOC123424594
hvu-r.1	123444181	uncharacterized LOC123444181
ghi-r.1	107891552	symplekin
ghi-r.1	107958059	symplekin
bna-r.1	106452458	symplekin
bna-r.1	BNAC05G21340D	uncharacterized BNAC05G21340D
bna-r.1	125574790	uncharacterized LOC125574790
sbi-r.1	8073942	uncharacterized LOC8073942
sbi-r.1	8063103	uncharacterized LOC8063103
sbi-r.1	8077525	symplekin
sot-r.1	102595517	uncharacterized LOC102595517
sot-r.1	102603942	uncharacterized LOC102603942
cit-r.1	102608920	uncharacterized LOC102608920
cit-r.1	102622533	uncharacterized LOC102622533
bdi-r.1	100836703	symplekin
bdi-r.1	100827067	symplekin
nta-r.1	107782573	uncharacterized LOC107782573
nta-r.1	107787592	uncharacterized LOC107787592
nta-r.1	107816280	uncharacterized LOC107816280

Top 50 coexpressed genes to CHLRE_02g099200v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_02g099200v5 (cre-r.1 coexpression data)

CoexMap"66052405"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005847 [list] [network] mRNA cleavage and polyadenylation specificity factor complex

(14 genes)

IEA

GO MF

Protein

XP_042927316.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 6, cyto 4

(predict for XP_042927316.1)

Subcellular
localization
TargetP

other 6

(predict for XP_042927316.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_02g099200v5	ath-u.5 for ESP4	ath-u.5 for AT1G27570	ath-u.5 for AT1G27595	gma-u.5 for 100779360	gma-u.5 for 100776979	gma-u.5 for 100810420	sly-u.5 for 101249356	sly-u.5 for 101252517	osa-u.5 for 4323885	osa-u.5 for 4344390	zma-u.5 for 103633605	zma-u.5 for 103651305	bra-r.6 for 103850419	bra-r.6 for 103839032	bra-r.6 for 103835387	vvi-u.5 for 100262578	vvi-u.5 for 100266091	ppo-u.5 for 7466073	ppo-u.5 for 7467209	mtr-u.5 for 25490161	mtr-u.5 for 25491448	tae-r.2 for 123061806	tae-r.2 for 123043511	hvu-r.1 for 123424594	hvu-r.1 for 123444181	ghi-r.1 for 107891552	ghi-r.1 for 107958059	bna-r.1 for 106452458	bna-r.1 for BNAC05G21340D	bna-r.1 for 125574790	sbi-r.1 for 8073942	sbi-r.1 for 8063103	sbi-r.1 for 8077525	sot-r.1 for 102595517	sot-r.1 for 102603942	cit-r.1 for 102608920	cit-r.1 for 102622533	bdi-r.1 for 100836703	bdi-r.1 for 100827067	nta-r.1 for 107782573	nta-r.1 for 107787592	nta-r.1 for 107816280

Ortholog

Ortholog ID: 3041

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

ESP4

Function^*

uncharacterized protein

HEAT repeat-containing protein

phosphatidylinositol 3- and 4-kinase family protein

symplekin

uncharacterized LOC100779360

uncharacterized LOC100776979

uncharacterized LOC100789876

uncharacterized LOC101249356

uncharacterized LOC101252517

uncharacterized LOC4323885

uncharacterized LOC4344390

symplekin

uncharacterized LOC103651305

symplekin

uncharacterized LOC103839032

uncharacterized LOC103835387

uncharacterized LOC100262578

uncharacterized LOC100266091

uncharacterized LOC7466073

uncharacterized LOC7467209

uncharacterized LOC25490161

symplekin

uncharacterized LOC123061806

symplekin

uncharacterized LOC123070494

uncharacterized LOC123424594

uncharacterized LOC123444181

symplekin

uncharacterized LOC107922126

uncharacterized BNAC05G21340D

uncharacterized LOC125574790

uncharacterized BNAA09G27860D

uncharacterized LOC8073942

uncharacterized LOC8063103

symplekin

uncharacterized LOC102595517

uncharacterized LOC102603942

uncharacterized LOC102608920

uncharacterized LOC102622533

symplekin

uncharacterized LOC107787592

uncharacterized LOC107816280

uncharacterized LOC107818596

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03013	Nucleocytoplasmic transport	2
ath03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00970	Aminoacyl-tRNA biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	4
gma03082	ATP-dependent chromatin remodeling	3
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	4
gma03082	ATP-dependent chromatin remodeling	3
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	4
gma03018	RNA degradation	2
gma03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03015	mRNA surveillance pathway	2
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03015	mRNA surveillance pathway	2
sly03018	RNA degradation	2
sly03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	4
zma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03013	Nucleocytoplasmic transport	3
bra03040	Spliceosome	2
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03015	mRNA surveillance pathway	5
vvi03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03082	ATP-dependent chromatin remodeling	3
ppo03083	Polycomb repressive complex	2
ppo03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	2
mtr04120	Ubiquitin mediated proteolysis	2
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	4
mtr03015	mRNA surveillance pathway	3
mtr04120	Ubiquitin mediated proteolysis	2
mtr03020	RNA polymerase	2
mtr03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	6
tae03013	Nucleocytoplasmic transport	3
tae04136	Autophagy - other	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	6
tae03013	Nucleocytoplasmic transport	3
tae03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03015	mRNA surveillance pathway	4
hvu03082	ATP-dependent chromatin remodeling	2
hvu03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	2
ghi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	2
ghi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	2
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03082	ATP-dependent chromatin remodeling	2
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03250	Viral life cycle - HIV-1	2
sot03015	mRNA surveillance pathway	2
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04146	Peroxisome	2
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	6
nta03018	RNA degradation	2
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	2
nta03082	ATP-dependent chromatin remodeling	2

Expression

Expression pattern

Entrez Gene ID^*

66052405

831597

839648

839651

100779360

100776979

100789876

101249356

101252517

4323885

4344390

103633605

103651305

103850419

103839032

103835387

100262578

100266091

7466073

7467209

25490161

25491448

123061806

123051380

123070494

123424594

123444181

107891552

107958059

107922126

106388523

125574790

106367313

8073942

8063103

8077525

102595517

102603942

102608920

102622533

100836703

100827067

107787592

107816280

107818596

The preparation time of this page was 0.2 [sec].


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	3	3	2	2	2	3	2	2	2	2	2	2	3	3	2	2	2	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_02g099200v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_02g099200v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**