ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	ESP4	HEAT repeat-containing protein
ath-r.7	ESP4	HEAT repeat-containing protein
ath-m.9	ESP4	HEAT repeat-containing protein
ath-e.2	ESP4	HEAT repeat-containing protein
ath-m.4.bio	ESP4	HEAT repeat-containing protein
ath-m.4.hor	ESP4	HEAT repeat-containing protein
ath-m.4.lig	ESP4	HEAT repeat-containing protein
ath-m.4.str	ESP4	HEAT repeat-containing protein
ath-m.4.tis	ESP4	HEAT repeat-containing protein
ath-u.5	AT1G27570	phosphatidylinositol 3- and 4-kinase family protein
ath-u.5	AT1G27595	symplekin
gma-u.5	100776979	uncharacterized LOC100776979
gma-u.5	100789876	uncharacterized LOC100789876
gma-u.5	100810420	uncharacterized LOC100810420
vvi-u.5	100262578	uncharacterized LOC100262578
vvi-u.5	100266091	uncharacterized LOC100266091
ppo-u.5	7466073	uncharacterized LOC7466073
ppo-u.5	7467209	uncharacterized LOC7467209
mtr-u.5	25490161	uncharacterized LOC25490161
mtr-u.5	25491448	symplekin
sly-u.5	101249356	uncharacterized LOC101249356
sly-u.5	101252517	uncharacterized LOC101252517
osa-u.5	4323885	uncharacterized LOC4323885
osa-u.5	4344390	uncharacterized LOC4344390
zma-u.5	103633605	symplekin
zma-u.5	103651305	uncharacterized LOC103651305

Top 50 coexpressed genes to ESP4 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to ESP4 (ath-u.5 coexpression data)

CoexMap"831597"

[Cytoscape]

Annotation

functional annotation

KEGG

ath03015 [list] [network] mRNA surveillance pathway (119 genes)

GO BP

GO:0035194 [list] [network] regulatory ncRNA-mediated post-transcriptional gene silencing	(93 genes)	IMP
GO:0006396 [list] [network] RNA processing	(588 genes)	IMP

GO CC

GO:0005847 [list] [network] mRNA cleavage and polyadenylation specificity factor complex	(3 genes)	NAS
GO:0005737 [list] [network] cytoplasm	(14000 genes)	ISM

GO MF

Protein

NP_001330013.1 [sequence] [blastp]
NP_001330014.1 [sequence] [blastp]
NP_195760.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, chlo 1, cyto 1, mito 1, cysk 1	(predict for NP_001330013.1)
nucl 4, cyto 4, cyto_nucl 4	(predict for NP_001330014.1)
nucl 5, cyto 2, plas 1, golg_plas 1, cyto_pero 1, cyto_E.R. 1	(predict for NP_195760.1)

Subcellular
localization
TargetP

other 6	(predict for NP_001330013.1)
mito 5	(predict for NP_001330014.1)
mito 4	(predict for NP_195760.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for ESP4	ath-r.7 for ESP4	ath-m.9 for ESP4	ath-e.2 for ESP4	ath-m.4.bio for ESP4	ath-m.4.hor for ESP4	ath-m.4.lig for ESP4	ath-m.4.str for ESP4	ath-m.4.tis for ESP4	ath-u.5 for AT1G27570	ath-u.5 for AT1G27595	gma-u.5 for 100776979	gma-u.5 for 100789876	gma-u.5 for 100810420	vvi-u.5 for 100262578	vvi-u.5 for 100266091	ppo-u.5 for 7466073	ppo-u.5 for 7467209	mtr-u.5 for 25490161	mtr-u.5 for 25491448	sly-u.5 for 101249356	sly-u.5 for 101252517	osa-u.5 for 4323885	osa-u.5 for 4344390	zma-u.5 for 103633605	zma-u.5 for 103651305

Ortholog

Ortholog ID: 3041

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

ESP4

Function^*

HEAT repeat-containing protein

phosphatidylinositol 3- and 4-kinase family protein

uncharacterized LOC103839032

symplekin

uncharacterized BNAC05G21340D

uncharacterized BNAA09G27860D

symplekin

uncharacterized LOC102608920

uncharacterized LOC102622533

uncharacterized LOC100776979

uncharacterized LOC100779360

uncharacterized LOC100266091

uncharacterized LOC100262578

uncharacterized LOC7466073

uncharacterized LOC7467209

uncharacterized LOC25490161

symplekin

uncharacterized LOC101249356

uncharacterized LOC101252517

uncharacterized LOC102603942

uncharacterized LOC102595517

uncharacterized LOC107787592

uncharacterized LOC107816280

uncharacterized LOC4323885

uncharacterized LOC4344390

symplekin

uncharacterized LOC103651305

uncharacterized LOC123070494

uncharacterized LOC123061806

uncharacterized LOC123424594

uncharacterized LOC123444181

uncharacterized LOC8063103

symplekin

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03013	Nucleocytoplasmic transport	2
ath03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00970	Aminoacyl-tRNA biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03013	Nucleocytoplasmic transport	3
bra03040	Spliceosome	2
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	2
ghi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	2
ghi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04146	Peroxisome	2
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	4
gma03082	ATP-dependent chromatin remodeling	3
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	4
gma03082	ATP-dependent chromatin remodeling	3
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03015	mRNA surveillance pathway	5
vvi03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03082	ATP-dependent chromatin remodeling	3
ppo03083	Polycomb repressive complex	2
ppo03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	2
mtr04120	Ubiquitin mediated proteolysis	2
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	4
mtr03015	mRNA surveillance pathway	3
mtr04120	Ubiquitin mediated proteolysis	2
mtr03020	RNA polymerase	2
mtr03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03015	mRNA surveillance pathway	2
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03015	mRNA surveillance pathway	2
sly03018	RNA degradation	2
sly03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03250	Viral life cycle - HIV-1	2
sot03015	mRNA surveillance pathway	2
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	6
nta03018	RNA degradation	2
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	4
zma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	6
tae03013	Nucleocytoplasmic transport	3
tae03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	6
tae03013	Nucleocytoplasmic transport	3
tae04136	Autophagy - other	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03015	mRNA surveillance pathway	4
hvu03082	ATP-dependent chromatin remodeling	2
hvu03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	2
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03082	ATP-dependent chromatin remodeling	2
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03082	ATP-dependent chromatin remodeling	2

Expression

Expression pattern

Entrez Gene ID^*

831597

839648

103839032

103850419

106388523

106367313

107958059

107891552

102608920

102622533

100776979

100779360

100266091

100262578

7466073

7467209

25490161

25491448

101249356

101252517

102603942

102595517

107787592

107816280

4323885

4344390

103633605

103651305

123070494

123061806

123424594

123444181

8063103

8077525

100836703

100827067

66052405

The preparation time of this page was 0.1 [sec].


Species	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	11	3	2	2	2	2	2	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to ESP4 (ath-u.5 coexpression data)

Top 50 enrichment test to ESP4 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**