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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   103647118   E3 ubiquitin-protein ligase listerin 
 zma-r.6   103647118   E3 ubiquitin-protein ligase listerin 
 sbi-r.1   8085627   E3 ubiquitin-protein ligase listerin 
 osa-u.5   4327816   E3 ubiquitin-protein ligase listerin 
 tae-r.2   123123953   E3 ubiquitin-protein ligase listerin 
 tae-r.2   123114417   E3 ubiquitin-protein ligase listerin 
 tae-r.2   123087509   E3 ubiquitin-protein ligase listerin 
 hvu-r.1   123395190   E3 ubiquitin-protein ligase listerin 
 bdi-r.1   100821292   E3 ubiquitin-protein ligase listerin 
 ath-u.5   AT5G58410   HEAT/U-box domain-containing protein 
 gma-u.5   100775576   E3 ubiquitin-protein ligase listerin 
 sly-u.5   101247956   E3 ubiquitin-protein ligase listerin 
 bra-r.6   103856694   E3 ubiquitin-protein ligase listerin-like 
 bra-r.6   103845267   E3 ubiquitin-protein ligase listerin 
 vvi-u.5   100267314   E3 ubiquitin-protein ligase listerin 
 ppo-u.5   7458833   E3 ubiquitin-protein ligase listerin 
 mtr-u.5   11406006   E3 ubiquitin-protein ligase listerin 
 ghi-r.1   107935073   E3 ubiquitin-protein ligase listerin 
 ghi-r.1   107927076   E3 ubiquitin-protein ligase listerin 
 bna-r.1   106420472   E3 ubiquitin-protein ligase listerin 
 bna-r.1   106376282   E3 ubiquitin-protein ligase listerin 
 bna-r.1   106387157   E3 ubiquitin-protein ligase listerin-like 
 sot-r.1   102580043   E3 ubiquitin-protein ligase listerin 
 cit-r.1   102622803   E3 ubiquitin-protein ligase listerin 
 nta-r.1   107796960   E3 ubiquitin-protein ligase listerin-like 
 nta-r.1   107820607   E3 ubiquitin-protein ligase listerin 
 cre-r.1   CHLRE_06g252100v5   uncharacterized protein 

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Top 50 coexpressed genes to 103647118 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103647118 (zma-u.5 coexpression data)

CoexMap"103647118"


zmaLOC103647118 | Entrez gene ID : 103647118      
Species zma sbi osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 2 1 1 3 1 1 1 1 1 2 1 1 1 2 3 1 1 2 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:1990116 [list] [network] ribosome-associated ubiquitin-dependent protein catabolic process  (2 genes)  IEA  
GO:0072344 [list] [network] rescue of stalled ribosome  (7 genes)  IEA  
GO CC
GO:1990112 [list] [network] RQC complex  (3 genes)  IEA  
GO:0005829 [list] [network] cytosol  (983 genes)  IEA  
GO MF
GO:0043023 [list] [network] ribosomal large subunit binding  (10 genes)  IEA  
GO:0061630 [list] [network] ubiquitin protein ligase activity  (251 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (807 genes)  IEA  
Protein XP_008669898.1 [sequence] [blastp]
XP_035821257.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 3  (predict for XP_008669898.1)
nucl 3,  chlo 3,  cysk_nucl 2,  cyto 1,  mito 1,  extr 1,  vacu 1,  E.R. 1,  E.R._vacu 1,  cyto_E.R. 1  (predict for XP_035821257.1)
Subcellular
localization
TargetP
mito 4  (predict for XP_008669898.1)
other 7  (predict for XP_035821257.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
103647118
zma-r.6
for
103647118
sbi-r.1
for
8085627
osa-u.5
for
4327816
tae-r.2
for
123123953
tae-r.2
for
123114417
tae-r.2
for
123087509
hvu-r.1
for
123395190
bdi-r.1
for
100821292
ath-u.5
for
AT5G58410
gma-u.5
for
100775576
sly-u.5
for
101247956
bra-r.6
for
103856694
bra-r.6
for
103845267
vvi-u.5
for
100267314
ppo-u.5
for
7458833
mtr-u.5
for
11406006
ghi-r.1
for
107935073
ghi-r.1
for
107927076
bna-r.1
for
106420472
bna-r.1
for
106376282
bna-r.1
for
106387157
sot-r.1
for
102580043
cit-r.1
for
102622803
nta-r.1
for
107796960
nta-r.1
for
107820607
cre-r.1
for
CHLRE_06g252100v5


Ortholog ID: 9176
Species zma sbi osa tae tae tae hvu bdi ath gma sly bra bra vvi ppo mtr ghi ghi bna bna bna sot cit nta nta cre
Symbol LOC103647118 LOC8085627 LOC4327816 LOC123123953 LOC123114417 LOC123087509 LOC123395190 LOC100821292 AT5G58410 LOC100775576 LOC101247956 LOC103856694 LOC103845267 LOC100267314 LOC7458833 LOC11406006 LOC107935073 LOC107927076 LOC106376282 LOC106387157 LOC106435791 LOC102580043 LOC102622803 LOC107796960 LOC107820607 CHLRE_06g252100v5
Function* E3 ubiquitin-protein ligase listerin E3 ubiquitin-protein ligase listerin E3 ubiquitin-protein ligase listerin E3 ubiquitin-protein ligase listerin E3 ubiquitin-protein ligase listerin E3 ubiquitin-protein ligase listerin E3 ubiquitin-protein ligase listerin E3 ubiquitin-protein ligase listerin HEAT/U-box domain-containing protein E3 ubiquitin-protein ligase listerin E3 ubiquitin-protein ligase listerin E3 ubiquitin-protein ligase listerin-like E3 ubiquitin-protein ligase listerin E3 ubiquitin-protein ligase listerin E3 ubiquitin-protein ligase listerin E3 ubiquitin-protein ligase listerin E3 ubiquitin-protein ligase listerin E3 ubiquitin-protein ligase listerin E3 ubiquitin-protein ligase listerin E3 ubiquitin-protein ligase listerin-like E3 ubiquitin-protein ligase listerin E3 ubiquitin-protein ligase listerin E3 ubiquitin-protein ligase listerin E3 ubiquitin-protein ligase listerin-like E3 ubiquitin-protein ligase listerin uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03083 Polycomb repressive complex 2
bra03250 Viral life cycle - HIV-1 2
bra00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
bra03015 mRNA surveillance pathway 2
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 5
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103647118 8085627 4327816 123123953 123114417 123087509 123395190 100821292 835954 100775576 101247956 103856694 103845267 100267314 7458833 11406006 107935073 107927076 106376282 106387157 106435791 102580043 102622803 107796960 107820607 5722179
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