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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8085627   E3 ubiquitin-protein ligase listerin 
 zma-u.5   103647118   E3 ubiquitin-protein ligase listerin 
 osa-u.5   4327816   E3 ubiquitin-protein ligase listerin 
 ath-u.5   AT5G58410   HEAT/U-box domain-containing protein 
 gma-u.5   100775576   E3 ubiquitin-protein ligase listerin 
 sly-u.5   101247956   E3 ubiquitin-protein ligase listerin 
 vvi-u.5   100267314   E3 ubiquitin-protein ligase listerin 
 ppo-u.5   7458833   E3 ubiquitin-protein ligase listerin 
 mtr-u.5   11406006   E3 ubiquitin-protein ligase listerin 

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Top 50 coexpressed genes to 8085627 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8085627 (sbi-r.1 coexpression data)

CoexMap"8085627"


sbiLOC8085627 | Entrez gene ID : 8085627    
Species sbi zma osa ath gma sly vvi ppo mtr hvu sot tae nta bra cit ghi bna bdi cre
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:1990116 [list] [network] ribosome-associated ubiquitin-dependent protein catabolic process  (2 genes)  IEA  
GO:0072344 [list] [network] rescue of stalled ribosome  (6 genes)  IEA  
GO CC
GO:1990112 [list] [network] RQC complex  (3 genes)  IEA  
GO:0005829 [list] [network] cytosol  (856 genes)  IEA  
GO MF
GO:0043023 [list] [network] ribosomal large subunit binding  (10 genes)  IEA  
GO:0061630 [list] [network] ubiquitin protein ligase activity  (192 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (824 genes)  IEA  
Protein XP_021317103.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 5,  nucl 3,  E.R._plas 3  (predict for XP_021317103.1)
Subcellular
localization
TargetP
other 8  (predict for XP_021317103.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8085627

.
zma-u.5
for
103647118

.
osa-u.5
for
4327816

.
ath-u.5
for
AT5G58410

.
gma-u.5
for
100775576

.
sly-u.5
for
101247956

.
vvi-u.5
for
100267314

.
ppo-u.5
for
7458833

.
mtr-u.5
for
11406006

.


Ortholog ID: 9176
Species ath gma sly osa zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT5G58410 LOC100775576 LOC101247956 LOC4327816 LOC103647118 LOC103856694 LOC103845267 LOC100267314 LOC7458833 LOC11406006 LOC123087509 LOC123114417 LOC123395190 LOC107927076 LOC107935073 LOC106376282 LOC106435791 CHLRE_06g252100v5 LOC8085627 LOC102580043 LOC102622803 LOC100821292 LOC107820607 LOC107796960
Function* HEAT/U-box domain-containing protein E3 ubiquitin-protein ligase listerin E3 ubiquitin-protein ligase listerin E3 ubiquitin-protein ligase listerin E3 ubiquitin-protein ligase listerin E3 ubiquitin-protein ligase listerin-like E3 ubiquitin-protein ligase listerin E3 ubiquitin-protein ligase listerin E3 ubiquitin-protein ligase listerin E3 ubiquitin-protein ligase listerin E3 ubiquitin-protein ligase listerin E3 ubiquitin-protein ligase listerin E3 ubiquitin-protein ligase listerin E3 ubiquitin-protein ligase listerin E3 ubiquitin-protein ligase listerin E3 ubiquitin-protein ligase listerin E3 ubiquitin-protein ligase listerin uncharacterized protein E3 ubiquitin-protein ligase listerin E3 ubiquitin-protein ligase listerin E3 ubiquitin-protein ligase listerin E3 ubiquitin-protein ligase listerin E3 ubiquitin-protein ligase listerin E3 ubiquitin-protein ligase listerin-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03083 Polycomb repressive complex 2
bra03250 Viral life cycle - HIV-1 2
bra00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
bra03015 mRNA surveillance pathway 2
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 5
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835954 100775576 101247956 4327816 103647118 103856694 103845267 100267314 7458833 11406006 123087509 123114417 123395190 107927076 107935073 106376282 106435791 5722179 8085627 102580043 102622803 100821292 107820607 107796960
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