ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bra-r.6	103827600	chromatin modification-related protein eaf-1
bra-r.6	103839502	R3H domain-containing protein 2
bra-r.6	103838209	uncharacterized LOC103838209
ath-u.5	PDE331	Octicosapeptide/Phox/Bem1p family protein
ath-u.5	AT3G18230	Octicosapeptide/Phox/Bem1p family protein
ghi-r.1	107903879	uncharacterized LOC107903879
ghi-r.1	107926629	probable serine/threonine-protein kinase yakA
ghi-r.1	107950992	RNA polymerase II degradation factor 1
cit-r.1	102609615	uncharacterized LOC102609615
gma-u.5	100797907	uncharacterized LOC100797907
gma-u.5	100808843	uncharacterized LOC100808843
gma-u.5	100775954	neurogenic protein mastermind
vvi-u.5	100250808	protein PAL OF QUIRKY
ppo-u.5	7459817	uncharacterized LOC7459817
ppo-u.5	7482856	uncharacterized LOC7482856
mtr-u.5	11423547	uncharacterized LOC11423547
mtr-u.5	25485469	putative mediator of RNA polymerase II transcription subunit 12
sly-u.5	101268863	protein PAL OF QUIRKY
sly-u.5	101252579	RAF-like serine/threonine-protein kinase PRAF
sly-u.5	101244569	uncharacterized LOC101244569
sot-r.1	102590490	uncharacterized LOC102590490
sot-r.1	102587767	activating signal cointegrator 1 complex subunit 2 homolog
sot-r.1	102602895	uncharacterized LOC102602895
nta-r.1	107823405	uncharacterized LOC107823405
nta-r.1	107821193	uncharacterized LOC107821193
osa-u.5	4325473	leucine-rich repeat extensin-like protein 2
zma-u.5	103649801	leucine-rich repeat extensin-like protein 2
zma-u.5	100279440	Octicosapeptide/Phox/Bem1p family protein
tae-r.2	123076977	mediator of RNA polymerase II transcription subunit 15
tae-r.2	123068462	RNA polymerase II degradation factor 1
tae-r.2	123059998	RNA polymerase II degradation factor 1
hvu-r.1	123442587	ataxin-2 homolog
sbi-r.1	8060830	RNA polymerase II degradation factor 1
bdi-r.1	100836637	trithorax group protein osa

Top 50 coexpressed genes to 103827600 (bra-r.6 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 103827600 (bra-r.6 coexpression data)

CoexMap"103827600"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0005515 [list] [network] protein binding

(6277 genes)

IEA

Protein

XP_009101363.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10

(predict for XP_009101363.2)

Subcellular
localization
TargetP

chlo 8

(predict for XP_009101363.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bra-r.6 for 103827600	bra-r.6 for 103839502	bra-r.6 for 103838209	ath-u.5 for PDE331	ath-u.5 for AT3G18230	ghi-r.1 for 107903879	ghi-r.1 for 107926629	ghi-r.1 for 107950992	cit-r.1 for 102609615	gma-u.5 for 100797907	gma-u.5 for 100808843	gma-u.5 for 100775954	vvi-u.5 for 100250808	ppo-u.5 for 7459817	ppo-u.5 for 7482856	mtr-u.5 for 11423547	mtr-u.5 for 25485469	sly-u.5 for 101268863	sly-u.5 for 101252579	sly-u.5 for 101244569	sot-r.1 for 102590490	sot-r.1 for 102587767	sot-r.1 for 102602895	nta-r.1 for 107823405	nta-r.1 for 107821193	osa-u.5 for 4325473	zma-u.5 for 103649801	zma-u.5 for 100279440	tae-r.2 for 123076977	tae-r.2 for 123068462	tae-r.2 for 123059998	hvu-r.1 for 123442587	sbi-r.1 for 8060830	bdi-r.1 for 100836637

Ortholog

Ortholog ID: 2606

Species

bra

bna

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

PDE331

Function^*

chromatin modification-related protein eaf-1

R3H domain-containing protein 2

uncharacterized LOC103838209

uncharacterized BNAA09G18520D

Octicosapeptide/Phox/Bem1p family protein

uncharacterized LOC107903879

probable serine/threonine-protein kinase yakA

RNA polymerase II degradation factor 1

uncharacterized LOC102609615

neurogenic protein mastermind

uncharacterized LOC100805172

neurogenic protein mastermind

protein PAL OF QUIRKY

uncharacterized LOC7459817

uncharacterized LOC7482856

uncharacterized LOC11423547

putative mediator of RNA polymerase II transcription subunit 12

protein PAL OF QUIRKY

RAF-like serine/threonine-protein kinase PRAF

uncharacterized LOC101244569

uncharacterized LOC102590490

activating signal cointegrator 1 complex subunit 2 homolog

uncharacterized LOC102602895

uncharacterized LOC107823405

uncharacterized LOC107784491

leucine-rich repeat extensin-like protein 2

Octicosapeptide/Phox/Bem1p family protein

mediator of RNA polymerase II transcription subunit 15

RNA polymerase II degradation factor 1

ataxin-2 homolog

RNA polymerase II degradation factor 1

trithorax group protein osa

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04142	Lysosome	3
bra04144	Endocytosis	3
bra05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00010	Glycolysis / Gluconeogenesis	3
bra00051	Fructose and mannose metabolism	3
bra00052	Galactose metabolism	3
bra00500	Starch and sucrose metabolism	3
bra00520	Amino sugar and nucleotide sugar metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00541	Biosynthesis of various nucleotide sugars	3
bna01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	2
ghi03018	RNA degradation	2
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	2
ghi03018	RNA degradation	2
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03250	Viral life cycle - HIV-1	2
gma03272	Virion - Hepatitis viruses	2
gma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	2
gma03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	3
sot03250	Viral life cycle - HIV-1	2
sot03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	3
sot03250	Viral life cycle - HIV-1	2
sot03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03410	Base excision repair	3
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	4
bdi04016	MAPK signaling pathway - plant	3

Expression

Expression pattern

Entrez Gene ID^*

103827600

103839502

103838209

106432059

814647

821351

107903879

107926629

107950992

102609615

100775954

100805172

100784396

100250808

7459817

7482856

11423547

25485469

101268863

101252579

101244569

102590490

102587767

102602895

107823405

107784491

4325473

103649801

100279440

123076977

123068462

123059998

123442587

8060830

100836637

The preparation time of this page was 0.1 [sec].


Species	bra	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre	bna
Paralog	3	2	3	1	3	1	2	2	3	3	2	1	2	3	1	1	1	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 103827600 (bra-r.6 coexpression data)

Top 50 enrichment test to 103827600 (bra-r.6 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**