ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bra-r.6	103827702	telomere repeat-binding factor 3
bra-r.6	103842747	telomere repeat-binding factor 4
bra-r.6	103874040	telomere repeat-binding factor 2
bra-r.6	103871379	telomere repeat-binding factor 1
bna-r.1	106424352	telomere repeat-binding factor 1
bna-r.1	106346146	telomere repeat-binding factor 1-like
bna-r.1	106402462	telomere repeat-binding factor 4
ath-u.5	AT1G17520	Homeodomain-like/winged-helix DNA-binding family protein
ath-u.5	AT1G72740	Homeodomain-like/winged-helix DNA-binding family protein
ath-u.5	AT1G54260	winged-helix DNA-binding transcription factor family protein
ghi-r.1	107886936	telomere repeat-binding factor 1
ghi-r.1	107899264	telomere repeat-binding factor 2
ghi-r.1	107906085	telomere repeat-binding factor 4
cit-r.1	102629981	telomere repeat-binding factor 1
cit-r.1	102625292	telomere repeat-binding factor 2
cit-r.1	102620353	single myb histone 4-like
gma-u.5	MYB55	MYB transcription factor
gma-u.5	100779583	telomere repeat-binding factor 2
gma-u.5	100780698	telomere repeat-binding factor 1
vvi-u.5	100254369	telomere repeat-binding factor 4
vvi-u.5	100261713	telomere repeat-binding factor 1
ppo-u.5	7464767	telomere repeat-binding factor 2
ppo-u.5	7484658	telomere repeat-binding factor 4
ppo-u.5	18107693	telomere repeat-binding factor 4
mtr-u.5	11413893	serine/arginine-rich-splicing factor SR34
mtr-u.5	11416450	telomere repeat-binding factor 2
mtr-u.5	11421244	telomere repeat-binding factor 5
sly-u.5	101261899	single myb histone 4
sly-u.5	101263059	telomere repeat-binding factor 1
sly-u.5	101248266	single myb histone 6
sot-r.1	102589734	telomere repeat-binding factor 4
sot-r.1	102581727	telomere repeat-binding factor 1
sot-r.1	102588044	telomere repeat-binding factor 1-like
nta-r.1	107792117	telomere repeat-binding factor 4-like
nta-r.1	107797718	telomere repeat-binding factor 1
nta-r.1	107798416	telomere repeat-binding factor 1
osa-u.5	4327680	single myb histone 4
osa-u.5	4324449	single myb histone 2
osa-u.5	4352780	single myb histone 6
zma-u.5	100274000	putative MYB-domain histone H1 family protein
zma-u.5	542124	single myb histone 6
zma-u.5	542125	single myb histone 4
tae-r.2	123070023	single myb histone 2
tae-r.2	123061376	single myb histone 2
hvu-r.1	123444236	single myb histone 4
hvu-r.1	123443794	single myb histone 2-like
sbi-r.1	8056578	single myb histone 5
sbi-r.1	8082166	single myb histone 1
sbi-r.1	8069770	single myb histone 4
bdi-r.1	100830626	single myb histone 2
bdi-r.1	100828330	single myb histone 5
bdi-r.1	100831004	single myb histone 6-like
cre-r.1	CHLRE_04g221200v5	uncharacterized protein

Top 50 coexpressed genes to 103827702 (bra-r.6 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 103827702 (bra-r.6 coexpression data)

CoexMap"103827702"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006334 [list] [network] nucleosome assembly

(66 genes)

IEA

GO CC

GO:0000786 [list] [network] nucleosome

(89 genes)

IEA

GO MF

GO:0003691 [list] [network] double-stranded telomeric DNA binding

(13 genes)

IEA

Protein

XP_009101486.1 [sequence] [blastp]

Subcellular
localization
wolf

mito 4, nucl 3, cyto 2, mito_plas 2

(predict for XP_009101486.1)

Subcellular
localization
TargetP

other 7

(predict for XP_009101486.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bra-r.6 for 103827702	bra-r.6 for 103842747	bra-r.6 for 103874040	bra-r.6 for 103871379	bna-r.1 for 106424352	bna-r.1 for 106346146	bna-r.1 for 106402462	ath-u.5 for AT1G17520	ath-u.5 for AT1G72740	ath-u.5 for AT1G54260	ghi-r.1 for 107886936	ghi-r.1 for 107899264	ghi-r.1 for 107906085	cit-r.1 for 102629981	cit-r.1 for 102625292	cit-r.1 for 102620353	gma-u.5 for MYB55	gma-u.5 for 100779583	gma-u.5 for 100780698	vvi-u.5 for 100254369	vvi-u.5 for 100261713	ppo-u.5 for 7464767	ppo-u.5 for 7484658	ppo-u.5 for 18107693	mtr-u.5 for 11413893	mtr-u.5 for 11416450	mtr-u.5 for 11421244	sly-u.5 for 101261899	sly-u.5 for 101263059	sly-u.5 for 101248266	sot-r.1 for 102589734	sot-r.1 for 102581727	sot-r.1 for 102588044	nta-r.1 for 107792117	nta-r.1 for 107797718	nta-r.1 for 107798416	osa-u.5 for 4327680	osa-u.5 for 4324449	osa-u.5 for 4352780	zma-u.5 for 100274000	zma-u.5 for 542124	zma-u.5 for 542125	tae-r.2 for 123070023	tae-r.2 for 123061376	hvu-r.1 for 123444236	hvu-r.1 for 123443794	sbi-r.1 for 8056578	sbi-r.1 for 8082166	sbi-r.1 for 8069770	bdi-r.1 for 100830626	bdi-r.1 for 100828330	bdi-r.1 for 100831004	cre-r.1 for CHLRE_04g221200v5

Ortholog

Ortholog ID: 463

Species

bra

bna

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

TRB2

TRB3

MYB85

Function^*

telomere repeat-binding factor 1

telomere repeat-binding factor 4

telomere repeat-binding factor 1

telomere repeat-binding factor 4

telomere repeat-binding factor 2-like

Homeodomain-like/winged-helix DNA-binding family protein

telomere repeat binding factor 3

telomere repeat-binding factor 4

telomere repeat-binding factor 2

telomere repeat-binding factor 1

telomere repeat-binding factor 2

telomere repeat-binding factor 4

telomere repeat-binding factor 2

MYB transcription factor MYB85

telomere repeat-binding factor 2

telomere repeat-binding factor 4

telomere repeat-binding factor 1

telomere repeat-binding factor 2

telomere repeat-binding factor 4

telomere repeat-binding factor 2

telomere repeat-binding factor 5

telomere repeat-binding factor 1

telomere repeat-binding factor 5

single myb histone 6

telomere repeat-binding factor 1

telomere repeat-binding factor 4

telomere repeat-binding factor 1-like

single myb histone 6-like

telomere repeat-binding factor 1-like

telomere repeat-binding factor 1

single myb histone 6

single myb histone 4

single myb histone 2

single myb histone 6

putative MYB-domain histone H1 family protein

single myb histone 6

single myb histone 3

single myb histone 2

single myb histone 4

single myb histone 2-like

single myb histone 5-like

single myb histone 5

single myb histone 4

single myb histone 6

single myb histone 2

single myb histone 5

single myb histone 6-like

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03050	Proteasome	6
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2
bra03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00440	Phosphonate and phosphinate metabolism	2
bna00564	Glycerophospholipid metabolism	2
bna03082	ATP-dependent chromatin remodeling	2
bna04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	2
gma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	3
mtr00053	Ascorbate and aldarate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	7
sly03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	3
sot03008	Ribosome biogenesis in eukaryotes	2
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	2
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	3
nta00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta01240	Biosynthesis of cofactors	6
nta04075	Plant hormone signal transduction	3
nta00760	Nicotinate and nicotinamide metabolism	2
nta00053	Ascorbate and aldarate metabolism	2
nta00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	3
osa03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04136	Autophagy - other	4
tae00190	Oxidative phosphorylation	4
tae04142	Lysosome	4
tae04145	Phagosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00190	Oxidative phosphorylation	8
tae04145	Phagosome	8
tae04142	Lysosome	7
tae04075	Plant hormone signal transduction	3
tae04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04136	Autophagy - other	4
tae00190	Oxidative phosphorylation	4
tae04142	Lysosome	4
tae04145	Phagosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03020	RNA polymerase	2
hvu03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03013	Nucleocytoplasmic transport	2
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03050	Proteasome	4
hvu04144	Endocytosis	3
hvu04145	Phagosome	2
hvu04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	3
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	2
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04142	Lysosome	2

Expression

Expression pattern

Entrez Gene ID^*

103832906

103835952

103872538

106424352

106358576

106415662

843606

836894

824147

107906085

107913297

107920908

102629981

102625292

102620018

100779583

778043

100796539

100254369

100261713

7464767

18107693

7497744

11421244

25486339

11436338

101248266

101247285

101263623

102589734

102588044

102587249

107802999

107784527

107775054

4327680

4324449

4352780

100274000

542124

542123

123070023

123061376

123078482

123444236

123443794

123398474

8056578

8069770

8057250

100830626

100828330

100831004

5717751

The preparation time of this page was 0.2 [sec].


Species	bra	bna	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	3	3	3	3	2	3	3	3	3	3	3	3	2	2	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 103827702 (bra-r.6 coexpression data)

Top 50 enrichment test to 103827702 (bra-r.6 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**