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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103836541   general transcription factor IIH subunit 2 
 bna-r.1   125577212   general transcription factor IIH subunit 2 
 bna-r.1   125591587   general transcription factor IIH subunit 2-like 
 ath-u.5   GTF2H2   general transcription factor II H2 
 ghi-r.1   107891493   general transcription factor IIH subunit 2 
 ghi-r.1   107889250   general transcription factor IIH subunit 2 
 cit-r.1   102608574   general transcription factor IIH subunit 2 
 cit-r.1   102629138   general transcription factor IIH subunit 2-like 
 gma-u.5   100803090   general transcription factor IIH subunit 2 
 gma-u.5   100793016   general transcription factor IIH subunit 2 
 vvi-u.5   100253554   general transcription factor IIH subunit 2 
 ppo-u.5   18097674   general transcription factor IIH subunit 2 
 mtr-u.5   11417626   general transcription factor IIH subunit 2 
 sly-u.5   101268093   general transcription factor IIH subunit 2 
 sot-r.1   102601591   general transcription factor IIH subunit 2 
 sot-r.1   102581609   general transcription factor IIH subunit 2-like 
 nta-r.1   107823650   general transcription factor IIH subunit 2 
 nta-r.1   107761102   general transcription factor IIH subunit 2-like 
 osa-u.5   4336358   general transcription factor IIH subunit 2 
 zma-u.5   100274342   General transcription factor IIH subunit 2 
 tae-r.2   123046000   general transcription factor IIH subunit 2 
 tae-r.2   123053873   general transcription factor IIH subunit 2 
 tae-r.2   123189742   general transcription factor IIH subunit 2 
 hvu-r.1   123427211   general transcription factor IIH subunit 2 
 sbi-r.1   8064457   general transcription factor IIH subunit 2 
 bdi-r.1   100833758   general transcription factor IIH subunit 2 
 cre-r.1   CHLRE_03g179550v5   uncharacterized protein 

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Top 50 coexpressed genes to 103836541 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103836541 (bra-r.6 coexpression data)

CoexMap"103836541"


braLOC103836541 | Entrez gene ID : 103836541    
Species bra bna ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 1 2 1 2 2 2 1 1 1 1 2 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG brp03022 [list] [network] Basal transcription factors (77 genes)
brp03420 [list] [network] Nucleotide excision repair (117 genes)
GO BP
GO:0006289 [list] [network] nucleotide-excision repair  (104 genes)  IEA  
GO:0006351 [list] [network] DNA-templated transcription  (335 genes)  IEA  
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (676 genes)  IEA  
GO CC
GO:0000439 [list] [network] transcription factor TFIIH core complex  (7 genes)  IEA  
GO:0005675 [list] [network] transcription factor TFIIH holo complex  (17 genes)  IEA  
GO MF
GO:0008270 [list] [network] zinc ion binding  (1500 genes)  IEA  
Protein XP_009111065.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  cyto 1  (predict for XP_009111065.1)
Subcellular
localization
TargetP
other 9  (predict for XP_009111065.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103836541
bna-r.1
for
125577212
bna-r.1
for
125591587
ath-u.5
for
GTF2H2
ghi-r.1
for
107891493
ghi-r.1
for
107889250
cit-r.1
for
102608574
cit-r.1
for
102629138
gma-u.5
for
100803090
gma-u.5
for
100793016
vvi-u.5
for
100253554
ppo-u.5
for
18097674
mtr-u.5
for
11417626
sly-u.5
for
101268093
sot-r.1
for
102601591
sot-r.1
for
102581609
nta-r.1
for
107823650
nta-r.1
for
107761102
osa-u.5
for
4336358
zma-u.5
for
100274342
tae-r.2
for
123046000
tae-r.2
for
123053873
tae-r.2
for
123189742
hvu-r.1
for
123427211
sbi-r.1
for
8064457
bdi-r.1
for
100833758
cre-r.1
for
CHLRE_03g179550v5


Ortholog ID: 9231
Species bra bna bna ath ghi ghi cit cit gma gma vvi ppo mtr sly sot sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC103836541 LOC125577212 LOC125591587 GTF2H2 LOC107891493 LOC107889250 LOC102608574 LOC102629138 LOC100803090 LOC100793016 LOC100253554 LOC18097674 LOC11417626 LOC101268093 LOC102601591 LOC102581609 LOC107823650 LOC107761102 LOC4336358 LOC100274342 LOC123046000 LOC123053873 LOC123189742 LOC123427211 LOC8064457 LOC100833758 CHLRE_03g179550v5
Function* general transcription factor IIH subunit 2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2-like general transcription factor II H2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2-like general transcription factor IIH subunit 2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2-like general transcription factor IIH subunit 2 general transcription factor IIH subunit 2-like general transcription factor IIH subunit 2 General transcription factor IIH subunit 2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 3
bna03420 Nucleotide excision repair 3
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 3
bna03420 Nucleotide excision repair 3
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 6
ghi00480 Glutathione metabolism 3
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 6
ghi00480 Glutathione metabolism 3
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03022 Basal transcription factors 2
cit03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 6
cit03022 Basal transcription factors 2
cit03420 Nucleotide excision repair 2
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 2
gma03420 Nucleotide excision repair 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 3
gma03420 Nucleotide excision repair 3
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 5
vvi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 3
ppo03420 Nucleotide excision repair 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 3
mtr03420 Nucleotide excision repair 2
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
sly03022 Basal transcription factors 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
sot03022 Basal transcription factors 3
sot03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03022 Basal transcription factors 4
sot03040 Spliceosome 4
sot03018 RNA degradation 3
sot03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 5
nta03015 mRNA surveillance pathway 5
nta03040 Spliceosome 5
nta03022 Basal transcription factors 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 4
nta03040 Spliceosome 3
nta03022 Basal transcription factors 2
nta03420 Nucleotide excision repair 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 7
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 4
zma03015 mRNA surveillance pathway 2
zma03018 RNA degradation 2
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
tae03022 Basal transcription factors 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
tae03022 Basal transcription factors 3
tae03420 Nucleotide excision repair 3
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 5
hvu03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103836541 125577212 125591587 839332 107891493 107889250 102608574 102629138 100803090 100793016 100253554 18097674 11417626 101268093 102601591 102581609 107823650 107761102 4336358 100274342 123046000 123053873 123189742 123427211 8064457 100833758 5728801
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