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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_03g179550v5   uncharacterized protein 
 ath-u.5   GTF2H2   general transcription factor II H2 
 gma-u.5   100803090   general transcription factor IIH subunit 2 
 gma-u.5   100793016   general transcription factor IIH subunit 2 
 sly-u.5   101268093   general transcription factor IIH subunit 2 
 osa-u.5   4336358   general transcription factor IIH subunit 2 
 zma-u.5   100274342   General transcription factor IIH subunit 2 
 vvi-u.5   100253554   general transcription factor IIH subunit 2 
 ppo-u.5   18097674   general transcription factor IIH subunit 2 
 mtr-u.5   11417626   general transcription factor IIH subunit 2 

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Top 50 coexpressed genes to CHLRE_03g179550v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_03g179550v5 (cre-r.1 coexpression data)

CoexMap"5728801"


creCHLRE_03g179550v5 | Entrez gene ID : 5728801      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03022 [list] [network] Basal transcription factors (19 genes)
cre03420 [list] [network] Nucleotide excision repair (42 genes)
GO BP
GO:0006289 [list] [network] nucleotide-excision repair  (28 genes)  IEA  
GO:0006351 [list] [network] DNA-templated transcription  (95 genes)  IEA  
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (190 genes)  IEA  
GO CC
GO:0000439 [list] [network] transcription factor TFIIH core complex  (4 genes)  IEA  
GO:0005675 [list] [network] transcription factor TFIIH holo complex  (9 genes)  IEA  
GO MF
GO:0008270 [list] [network] zinc ion binding  (213 genes)  IEA  
Protein XP_042926148.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 1,  chlo 1,  pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_042926148.1)
Subcellular
localization
TargetP
other 9  (predict for XP_042926148.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_03g179550v5

.
ath-u.5
for
GTF2H2

.
gma-u.5
for
100803090

.
gma-u.5
for
100793016

.
sly-u.5
for
101268093

.
osa-u.5
for
4336358

.
zma-u.5
for
100274342

.
vvi-u.5
for
100253554

.
ppo-u.5
for
18097674

.
mtr-u.5
for
11417626

.


Ortholog ID: 9231
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot sot cit cit bdi nta nta
Symbol GTF2H2 LOC100803090 LOC100793016 LOC101268093 LOC4336358 LOC100274342 LOC103836541 LOC100253554 LOC18097674 LOC11417626 LOC123053873 LOC123046000 LOC123427211 LOC107891493 LOC107889250 LOC125591587 LOC125577212 CHLRE_03g179550v5 LOC8064457 LOC102581609 LOC102601591 LOC102629138 LOC102608574 LOC100833758 LOC107823650 LOC107761102
Function* general transcription factor II H2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2 General transcription factor IIH subunit 2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2-like general transcription factor IIH subunit 2 uncharacterized protein general transcription factor IIH subunit 2 general transcription factor IIH subunit 2-like general transcription factor IIH subunit 2 general transcription factor IIH subunit 2-like general transcription factor IIH subunit 2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 2
gma03420 Nucleotide excision repair 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 3
gma03420 Nucleotide excision repair 3
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
sly03022 Basal transcription factors 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 7
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 4
zma03015 mRNA surveillance pathway 2
zma03018 RNA degradation 2
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 5
vvi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 3
ppo03420 Nucleotide excision repair 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 3
mtr03420 Nucleotide excision repair 2
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
tae03022 Basal transcription factors 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 5
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 6
ghi00480 Glutathione metabolism 3
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 6
ghi00480 Glutathione metabolism 3
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 3
bna03420 Nucleotide excision repair 3
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 3
bna03420 Nucleotide excision repair 3
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03022 Basal transcription factors 4
sot03040 Spliceosome 4
sot03018 RNA degradation 3
sot03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
sot03022 Basal transcription factors 3
sot03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 6
cit03022 Basal transcription factors 2
cit03420 Nucleotide excision repair 2
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03022 Basal transcription factors 2
cit03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 5
nta03015 mRNA surveillance pathway 5
nta03040 Spliceosome 5
nta03022 Basal transcription factors 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 4
nta03040 Spliceosome 3
nta03022 Basal transcription factors 2
nta03420 Nucleotide excision repair 2
nta03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839332 100803090 100793016 101268093 4336358 100274342 103836541 100253554 18097674 11417626 123053873 123046000 123427211 107891493 107889250 125591587 125577212 5728801 8064457 102581609 102601591 102629138 102608574 100833758 107823650 107761102
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