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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123053873   general transcription factor IIH subunit 2 
 tae-r.2   123189742   general transcription factor IIH subunit 2 
 tae-r.2   123046000   general transcription factor IIH subunit 2 
 hvu-r.1   123427211   general transcription factor IIH subunit 2 
 bdi-r.1   100833758   general transcription factor IIH subunit 2 
 osa-u.5   4336358   general transcription factor IIH subunit 2 
 zma-u.5   100274342   General transcription factor IIH subunit 2 
 sbi-r.1   8064457   general transcription factor IIH subunit 2 
 ath-u.5   GTF2H2   general transcription factor II H2 
 gma-u.5   100803090   general transcription factor IIH subunit 2 
 gma-u.5   100793016   general transcription factor IIH subunit 2 
 sly-u.5   101268093   general transcription factor IIH subunit 2 
 bra-r.6   103836541   general transcription factor IIH subunit 2 
 vvi-u.5   100253554   general transcription factor IIH subunit 2 
 ppo-u.5   18097674   general transcription factor IIH subunit 2 
 mtr-u.5   11417626   general transcription factor IIH subunit 2 
 ghi-r.1   107891493   general transcription factor IIH subunit 2 
 ghi-r.1   107889250   general transcription factor IIH subunit 2 
 bna-r.1   125577212   general transcription factor IIH subunit 2 
 bna-r.1   125591587   general transcription factor IIH subunit 2-like 
 sot-r.1   102601591   general transcription factor IIH subunit 2 
 sot-r.1   102581609   general transcription factor IIH subunit 2-like 
 cit-r.1   102608574   general transcription factor IIH subunit 2 
 cit-r.1   102629138   general transcription factor IIH subunit 2-like 
 nta-r.1   107823650   general transcription factor IIH subunit 2 
 nta-r.1   107761102   general transcription factor IIH subunit 2-like 
 cre-r.1   CHLRE_03g179550v5   uncharacterized protein 

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Top 50 coexpressed genes to 123053873 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123053873 (tae-r.2 coexpression data)

CoexMap"123053873"


taeLOC123053873 | Entrez gene ID : 123053873    
Species tae hvu bdi osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 3 1 1 1 1 1 1 2 1 1 1 1 1 2 2 2 2 2 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG taes03022 [list] [network] Basal transcription factors (188 genes)
taes03420 [list] [network] Nucleotide excision repair (265 genes)
GO BP
GO:0006289 [list] [network] nucleotide-excision repair  (126 genes)  IEA  
GO:0006351 [list] [network] DNA-templated transcription  (790 genes)  IEA  
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (1094 genes)  IEA  
GO CC
GO:0000439 [list] [network] transcription factor TFIIH core complex  (18 genes)  IEA  
GO:0005675 [list] [network] transcription factor TFIIH holo complex  (23 genes)  IEA  
GO MF
GO:0008270 [list] [network] zinc ion binding  (2838 genes)  IEA  
Protein XP_044333393.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 3,  cyto 1,  nucl_plas 1  (predict for XP_044333393.1)
Subcellular
localization
TargetP
other 8,  mito 4  (predict for XP_044333393.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123053873
tae-r.2
for
123189742
tae-r.2
for
123046000
hvu-r.1
for
123427211
bdi-r.1
for
100833758
osa-u.5
for
4336358
zma-u.5
for
100274342
sbi-r.1
for
8064457
ath-u.5
for
GTF2H2
gma-u.5
for
100803090
gma-u.5
for
100793016
sly-u.5
for
101268093
bra-r.6
for
103836541
vvi-u.5
for
100253554
ppo-u.5
for
18097674
mtr-u.5
for
11417626
ghi-r.1
for
107891493
ghi-r.1
for
107889250
bna-r.1
for
125577212
bna-r.1
for
125591587
sot-r.1
for
102601591
sot-r.1
for
102581609
cit-r.1
for
102608574
cit-r.1
for
102629138
nta-r.1
for
107823650
nta-r.1
for
107761102
cre-r.1
for
CHLRE_03g179550v5


Ortholog ID: 9231
Species tae tae tae hvu bdi osa zma sbi ath gma gma sly bra vvi ppo mtr ghi ghi bna bna sot sot cit cit nta nta cre
Symbol LOC123053873 LOC123189742 LOC123046000 LOC123427211 LOC100833758 LOC4336358 LOC100274342 LOC8064457 GTF2H2 LOC100803090 LOC100793016 LOC101268093 LOC103836541 LOC100253554 LOC18097674 LOC11417626 LOC107891493 LOC107889250 LOC125577212 LOC125591587 LOC102601591 LOC102581609 LOC102608574 LOC102629138 LOC107823650 LOC107761102 CHLRE_03g179550v5
Function* general transcription factor IIH subunit 2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2 General transcription factor IIH subunit 2 general transcription factor IIH subunit 2 general transcription factor II H2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2 general transcription factor IIH subunit 2-like general transcription factor IIH subunit 2 general transcription factor IIH subunit 2-like general transcription factor IIH subunit 2 general transcription factor IIH subunit 2-like general transcription factor IIH subunit 2 general transcription factor IIH subunit 2-like uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
tae03022 Basal transcription factors 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
tae03022 Basal transcription factors 3
tae03420 Nucleotide excision repair 3
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 5
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 7
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 4
zma03015 mRNA surveillance pathway 2
zma03018 RNA degradation 2
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 2
gma03420 Nucleotide excision repair 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 3
gma03420 Nucleotide excision repair 3
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
sly03022 Basal transcription factors 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 5
vvi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 3
ppo03420 Nucleotide excision repair 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 3
mtr03420 Nucleotide excision repair 2
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 6
ghi00480 Glutathione metabolism 3
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 6
ghi00480 Glutathione metabolism 3
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 3
bna03420 Nucleotide excision repair 3
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 3
bna03420 Nucleotide excision repair 3
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
sot03022 Basal transcription factors 3
sot03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03022 Basal transcription factors 4
sot03040 Spliceosome 4
sot03018 RNA degradation 3
sot03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03022 Basal transcription factors 2
cit03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 6
cit03022 Basal transcription factors 2
cit03420 Nucleotide excision repair 2
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 5
nta03015 mRNA surveillance pathway 5
nta03040 Spliceosome 5
nta03022 Basal transcription factors 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 4
nta03040 Spliceosome 3
nta03022 Basal transcription factors 2
nta03420 Nucleotide excision repair 2
nta03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123053873 123189742 123046000 123427211 100833758 4336358 100274342 8064457 839332 100803090 100793016 101268093 103836541 100253554 18097674 11417626 107891493 107889250 125577212 125591587 102601591 102581609 102608574 102629138 107823650 107761102 5728801
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