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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103843349   transcription factor PIF3 
 bra-r.6   103871725   transcription factor PIF3 
 bna-r.1   106419805   transcription factor PIF3 
 bna-r.1   106397555   transcription factor PIF3 
 bna-r.1   106346269   transcription factor PIF3 
 ath-u.5   PIF3   phytochrome interacting factor 3 
 ghi-r.1   107955422   transcription factor PIF3 
 ghi-r.1   107927211   transcription factor PIF3 
 cit-r.1   102621125   transcription factor PIF3 
 gma-u.5   102659557   transcription factor PIF3 
 gma-u.5   100820151   transcription factor PIF3 
 gma-u.5   100794974   transcription factor PIF3 
 vvi-u.5   100247781   transcription factor PIF3 
 vvi-u.5   100253874   transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 
 ppo-u.5   7478869   transcription factor PIF3 
 ppo-u.5   18098446   transcription factor PIF3 
 mtr-u.5   11406493   transcription factor PIF3 
 mtr-u.5   11427226   transcription factor PIF3 
 sly-u.5   101267355   transcription factor PIF3 
 sot-r.1   102604891   transcription factor PIF3-like 
 nta-r.1   107784593   transcription factor PIF3 
 nta-r.1   107795081   transcription factor PIF3 
 nta-r.1   107827926   transcription factor PIF3-like 

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Top 50 coexpressed genes to 103843349 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103843349 (bra-r.6 coexpression data)

CoexMap"103843349"


braLOC103843349 | Entrez gene ID : 103843349    
Species bra bna ath ghi cit gma vvi ppo mtr sly sot nta osa bdi tae zma sbi hvu cre
Paralog 2 3 1 2 1 3 2 2 2 1 1 3 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG brp04075 [list] [network] Plant hormone signal transduction (750 genes)
brp04712 [list] [network] Circadian rhythm - plant (74 genes)
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (2595 genes)  IEA  
GO CC
GO MF
GO:0046983 [list] [network] protein dimerization activity  (727 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1840 genes)  IEA  
Protein XP_009118315.2 [sequence] [blastp]
XP_009118316.2 [sequence] [blastp]
XP_033136244.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_009118315.2)
nucl 10  (predict for XP_009118316.2)
nucl 10  (predict for XP_033136244.1)
Subcellular
localization
TargetP
other 5,  chlo 4  (predict for XP_009118315.2)
other 5,  chlo 4  (predict for XP_009118316.2)
other 5,  chlo 4  (predict for XP_033136244.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103843349
bra-r.6
for
103871725
bna-r.1
for
106419805
bna-r.1
for
106397555
bna-r.1
for
106346269
ath-u.5
for
PIF3
ghi-r.1
for
107955422
ghi-r.1
for
107927211
cit-r.1
for
102621125
gma-u.5
for
102659557
gma-u.5
for
100820151
gma-u.5
for
100794974
vvi-u.5
for
100247781
vvi-u.5
for
100253874
ppo-u.5
for
7478869
ppo-u.5
for
18098446
mtr-u.5
for
11406493
mtr-u.5
for
11427226
sly-u.5
for
101267355
sot-r.1
for
102604891
nta-r.1
for
107784593
nta-r.1
for
107795081
nta-r.1
for
107827926


Ortholog ID: 11040
Species bra bra bna bna bna ath ghi ghi cit gma gma gma vvi vvi ppo ppo mtr mtr sly sot nta nta nta
Symbol LOC103843349 LOC103871725 LOC106419805 LOC106346269 LOC125578610 PIF3 LOC107955422 LOC107927211 LOC102621125 LOC102659557 LOC100820151 LOC100794974 LOC100247781 LOC100253874 LOC7478869 LOC18098446 LOC11406493 LOC11427226 LOC101267355 LOC102604891 LOC107784593 LOC107795081 LOC107827926
Function* transcription factor PIF3 transcription factor PIF3 transcription factor PIF3 transcription factor PIF3 transcription factor PIF3-like phytochrome interacting factor 3 transcription factor PIF3 transcription factor PIF3 transcription factor PIF3 transcription factor PIF3 transcription factor PIF3 transcription factor PIF3 transcription factor PIF3 transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 transcription factor PIF3 transcription factor PIF3 transcription factor PIF3 transcription factor PIF3 transcription factor PIF3 transcription factor PIF3-like transcription factor PIF3 transcription factor PIF3 transcription factor PIF3-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 6
bra04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 4
bra04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 4
bna04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 4
bna04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 4
bna04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 7
ath04016 MAPK signaling pathway - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
ghi04075 Plant hormone signal transduction 2
ghi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
ghi04075 Plant hormone signal transduction 2
ghi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 3
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 5
gma00860 Porphyrin metabolism 2
gma01240 Biosynthesis of cofactors 2
gma04712 Circadian rhythm - plant 2
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 3
gma00310 Lysine degradation 2
gma03083 Polycomb repressive complex 2
gma04075 Plant hormone signal transduction 2
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 5
ppo04712 Circadian rhythm - plant 2
ppo00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
ppo04712 Circadian rhythm - plant 2
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly04141 Protein processing in endoplasmic reticulum 4
sly04144 Endocytosis 3
sly04626 Plant-pathogen interaction 2
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 4
sot00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103843349 103871725 106419805 106346269 125578610 837479 107955422 107927211 102621125 102659557 100820151 100794974 100247781 100253874 7478869 18098446 11406493 11427226 101267355 102604891 107784593 107795081 107827926
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