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Orthologous genes in OrthoFinder**

Species Gene Description
 nta-r.1   107795081   transcription factor PIF3 
 sly-u.5   101267355   transcription factor PIF3 
 ath-u.5   PIF3   phytochrome interacting factor 3 
 gma-u.5   102659557   transcription factor PIF3 
 gma-u.5   100820151   transcription factor PIF3 
 gma-u.5   100794974   transcription factor PIF3 
 vvi-u.5   100247781   transcription factor PIF3 
 vvi-u.5   100253874   transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 
 ppo-u.5   18098446   transcription factor PIF3 
 ppo-u.5   7478869   transcription factor PIF3 
 mtr-u.5   11427226   transcription factor PIF3 
 mtr-u.5   11406493   transcription factor PIF3 

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Top 50 coexpressed genes to 107795081 (nta-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107795081 (nta-r.1 coexpression data)

CoexMap"107795081"


ntaLOC107795081 | Entrez gene ID : 107795081      
Species nta sly ath gma vvi ppo mtr bdi hvu bra cit bna sbi ghi osa sot cre tae zma
Paralog 1 1 1 3 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG nta04075 [list] [network] Plant hormone signal transduction (826 genes)
nta04712 [list] [network] Circadian rhythm - plant (92 genes)
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (2987 genes)  IEA  
GO CC
GO MF
GO:0046983 [list] [network] protein dimerization activity  (1129 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (2091 genes)  IEA  
Protein XP_016473138.2 [sequence] [blastp]
XP_016473139.2 [sequence] [blastp]
XP_016473140.2 [sequence] [blastp]
XP_016473141.2 [sequence] [blastp]
XP_075073665.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_016473138.2)
nucl 10  (predict for XP_016473139.2)
nucl 10  (predict for XP_016473140.2)
nucl 10  (predict for XP_016473141.2)
nucl 10  (predict for XP_075073665.1)
Subcellular
localization
TargetP
mito 4,  chlo 3  (predict for XP_016473138.2)
mito 4,  chlo 3  (predict for XP_016473139.2)
mito 4,  chlo 3  (predict for XP_016473140.2)
mito 4,  chlo 3  (predict for XP_016473141.2)
mito 4,  chlo 3  (predict for XP_075073665.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

nta-r.1
for
107795081
sly-u.5
for
101267355
ath-u.5
for
PIF3
gma-u.5
for
102659557
gma-u.5
for
100820151
gma-u.5
for
100794974
vvi-u.5
for
100247781
vvi-u.5
for
100253874
ppo-u.5
for
18098446
ppo-u.5
for
7478869
mtr-u.5
for
11427226
mtr-u.5
for
11406493


Ortholog ID: 11040
Species nta nta sly sot ath gma gma bra bra vvi vvi ppo ppo mtr mtr ghi ghi bna bna cit
Symbol LOC107795081 LOC107784593 LOC101267355 LOC102604891 PIF3 LOC100794974 LOC100820151 LOC103843349 LOC103871725 LOC100253874 LOC100247781 LOC18098446 LOC7478869 LOC11427226 LOC11406493 LOC107927211 LOC107955422 LOC106346269 LOC106419805 LOC102621125
Function* transcription factor PIF3 transcription factor PIF3 transcription factor PIF3 transcription factor PIF3-like phytochrome interacting factor 3 transcription factor PIF3 transcription factor PIF3 transcription factor PIF3 transcription factor PIF3 transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 transcription factor PIF3 transcription factor PIF3 transcription factor PIF3 transcription factor PIF3 transcription factor PIF3 transcription factor PIF3 transcription factor PIF3 transcription factor PIF3 transcription factor PIF3 transcription factor PIF3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly04141 Protein processing in endoplasmic reticulum 4
sly04144 Endocytosis 3
sly04626 Plant-pathogen interaction 2
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 4
sot00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 7
ath04016 MAPK signaling pathway - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 3
gma00310 Lysine degradation 2
gma03083 Polycomb repressive complex 2
gma04075 Plant hormone signal transduction 2
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 5
gma00860 Porphyrin metabolism 2
gma01240 Biosynthesis of cofactors 2
gma04712 Circadian rhythm - plant 2
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 6
bra04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 4
bra04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
ppo04712 Circadian rhythm - plant 2
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 5
ppo04712 Circadian rhythm - plant 2
ppo00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
ghi04075 Plant hormone signal transduction 2
ghi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
ghi04075 Plant hormone signal transduction 2
ghi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 4
bna04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 4
bna04712 Circadian rhythm - plant 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107795081 107784593 101267355 102604891 837479 100794974 100820151 103843349 103871725 100253874 100247781 18098446 7478869 11427226 11406493 107927211 107955422 106346269 106419805 102621125
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