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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7478869   transcription factor PIF3 
 ppo-r.4   7478869   transcription factor PIF3 
 ppo-u.5   18098446   transcription factor PIF3 
 gma-u.5   102659557   transcription factor PIF3 
 gma-u.5   100820151   transcription factor PIF3 
 gma-u.5   100794974   transcription factor PIF3 
 mtr-u.5   11427226   transcription factor PIF3 
 mtr-u.5   11406493   transcription factor PIF3 
 ath-u.5   PIF3   phytochrome interacting factor 3 
 vvi-u.5   100247781   transcription factor PIF3 
 vvi-u.5   100253874   transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 
 sly-u.5   101267355   transcription factor PIF3 

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Top 50 coexpressed genes to 7478869 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7478869 (ppo-u.5 coexpression data)

CoexMap"7478869"


ppoLOC7478869 | Entrez gene ID : 7478869    
Species ppo gma mtr ath vvi sly sot hvu tae cit sbi zma ghi cre bna nta bdi bra osa
Paralog 3 3 2 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop04075 [list] [network] Plant hormone signal transduction (517 genes)
pop04712 [list] [network] Circadian rhythm - plant (60 genes)
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1948 genes)  IEA  
GO CC
GO MF
GO:0046983 [list] [network] protein dimerization activity  (520 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1363 genes)  IEA  
Protein XP_024438995.1 [sequence] [blastp]
XP_024438996.1 [sequence] [blastp]
XP_024438997.1 [sequence] [blastp]
XP_024438998.1 [sequence] [blastp]
XP_024438999.1 [sequence] [blastp]
XP_024439000.1 [sequence] [blastp]
XP_052302502.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_024438995.1)
nucl 10  (predict for XP_024438996.1)
nucl 10  (predict for XP_024438997.1)
nucl 10  (predict for XP_024438998.1)
nucl 10  (predict for XP_024438999.1)
nucl 10  (predict for XP_024439000.1)
nucl 10  (predict for XP_052302502.1)
Subcellular
localization
TargetP
other 7  (predict for XP_024438995.1)
other 7  (predict for XP_024438996.1)
other 7  (predict for XP_024438997.1)
other 7  (predict for XP_024438998.1)
other 7  (predict for XP_024438999.1)
other 7  (predict for XP_024439000.1)
other 7  (predict for XP_052302502.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7478869

.
ppo-r.4
for
7478869

.
ppo-u.5
for
18098446

.
gma-u.5
for
102659557

.
gma-u.5
for
100820151

.
gma-u.5
for
100794974

.
mtr-u.5
for
11427226

.
mtr-u.5
for
11406493

.
ath-u.5
for
PIF3

.
vvi-u.5
for
100247781

.
vvi-u.5
for
100253874

.
sly-u.5
for
101267355

.


Ortholog ID: 11040
Species ath gma gma sly bra bra vvi vvi ppo ppo mtr mtr ghi ghi bna bna sot cit nta nta
Symbol PIF3 LOC100794974 LOC100820151 LOC101267355 LOC103843349 LOC103871725 LOC100253874 LOC100247781 LOC18098446 LOC7478869 LOC11427226 LOC11406493 LOC107927211 LOC107955422 LOC106346269 LOC106419805 LOC102604891 LOC102621125 LOC107795081 LOC107784593
Function* phytochrome interacting factor 3 transcription factor PIF3 transcription factor PIF3 transcription factor PIF3 transcription factor PIF3 transcription factor PIF3 transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 transcription factor PIF3 transcription factor PIF3 transcription factor PIF3 transcription factor PIF3 transcription factor PIF3 transcription factor PIF3 transcription factor PIF3 transcription factor PIF3 transcription factor PIF3 transcription factor PIF3-like transcription factor PIF3 transcription factor PIF3 transcription factor PIF3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 7
ath04016 MAPK signaling pathway - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 3
gma00310 Lysine degradation 2
gma03083 Polycomb repressive complex 2
gma04075 Plant hormone signal transduction 2
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 5
gma00860 Porphyrin metabolism 2
gma01240 Biosynthesis of cofactors 2
gma04712 Circadian rhythm - plant 2
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly04141 Protein processing in endoplasmic reticulum 4
sly04144 Endocytosis 3
sly04626 Plant-pathogen interaction 2
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 6
bra04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 4
bra04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
ppo04712 Circadian rhythm - plant 2
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 5
ppo04712 Circadian rhythm - plant 2
ppo00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
ghi04075 Plant hormone signal transduction 2
ghi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
ghi04075 Plant hormone signal transduction 2
ghi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 4
bna04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 4
bna04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 4
sot00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
nta04712 Circadian rhythm - plant 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837479 100794974 100820151 101267355 103843349 103871725 100253874 100247781 18098446 7478869 11427226 11406493 107927211 107955422 106346269 106419805 102604891 102621125 107795081 107784593
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