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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103846352   pentatricopeptide repeat-containing protein At3g26540 
 bna-r.1   125577678   pentatricopeptide repeat-containing protein At3g26540-like 
 bna-r.1   106413251   pentatricopeptide repeat-containing protein At3g26540 
 bna-r.1   106360378   pentatricopeptide repeat-containing protein At3g26540-like 
 ath-u.5   AT3G26540   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ghi-r.1   107949522   pentatricopeptide repeat-containing protein At3g26540 
 ghi-r.1   107890139   pentatricopeptide repeat-containing protein At3g26540 
 cit-r.1   107174240   pentatricopeptide repeat-containing protein At3g26540 
 gma-u.5   100775626   pentatricopeptide repeat-containing protein At3g26540 
 vvi-u.5   100253985   pentatricopeptide repeat-containing protein At3g26540 
 mtr-u.5   25489737   pentatricopeptide repeat-containing protein At3g26540 
 sly-u.5   101266932   pentatricopeptide repeat-containing protein At3g26540 
 sot-r.1   102581455   pentatricopeptide repeat-containing protein At3g26540 
 nta-r.1   107763155   pentatricopeptide repeat-containing protein At3g26540-like 
 nta-r.1   107814536   pentatricopeptide repeat-containing protein At3g26540-like 
 zma-u.5   103641671   pentatricopeptide repeat-containing protein At3g26540 
 tae-r.2   123189264   pentatricopeptide repeat-containing protein At3g26540 
 tae-r.2   123053361   pentatricopeptide repeat-containing protein At3g26540 
 hvu-r.1   123426770   pentatricopeptide repeat-containing protein At3g26540 
 sbi-r.1   8080316   pentatricopeptide repeat-containing protein At3g26540 
 bdi-r.1   100844847   pentatricopeptide repeat-containing protein At3g26540 

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Top 50 coexpressed genes to 103846352 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103846352 (bra-r.6 coexpression data)

CoexMap"103846352"


braLOC103846352 | Entrez gene ID : 103846352    
Species bra bna ath ghi cit gma vvi mtr sly sot nta zma tae hvu sbi bdi ppo cre osa
Paralog 1 3 1 2 1 1 1 1 1 1 2 1 2 1 1 1 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (422 genes)  IEA  
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1857 genes)  IEA  
GO:0005515 [list] [network] protein binding  (6277 genes)  IEA  
Protein XP_009121513.1 [sequence] [blastp]
XP_018509590.1 [sequence] [blastp]
XP_033135829.1 [sequence] [blastp]
XP_033135830.1 [sequence] [blastp]
XP_033135831.1 [sequence] [blastp]
XP_033135832.1 [sequence] [blastp]
XP_033135833.1 [sequence] [blastp]
XP_033135834.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  cyto 1,  mito 1,  vacu 1,  cyto_nucl 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_009121513.1)
chlo 7,  cyto 1,  mito 1,  vacu 1,  cyto_nucl 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_018509590.1)
chlo 7,  cyto 1,  mito 1,  vacu 1,  cyto_nucl 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_033135829.1)
chlo 7,  cyto 1,  mito 1,  vacu 1,  cyto_nucl 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_033135830.1)
chlo 7,  cyto 1,  mito 1,  vacu 1,  cyto_nucl 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_033135831.1)
chlo 7,  cyto 1,  mito 1,  vacu 1,  cyto_nucl 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_033135832.1)
chlo 7,  cyto 1,  mito 1,  vacu 1,  cyto_nucl 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_033135833.1)
chlo 7,  cyto 1,  mito 1,  vacu 1,  cyto_nucl 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_033135834.1)
Subcellular
localization
TargetP
other 3  (predict for XP_009121513.1)
other 3  (predict for XP_018509590.1)
other 3  (predict for XP_033135829.1)
other 3  (predict for XP_033135830.1)
other 3  (predict for XP_033135831.1)
other 3  (predict for XP_033135832.1)
other 3  (predict for XP_033135833.1)
other 3  (predict for XP_033135834.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103846352
bna-r.1
for
125577678
bna-r.1
for
106413251
bna-r.1
for
106360378
ath-u.5
for
AT3G26540
ghi-r.1
for
107949522
ghi-r.1
for
107890139
cit-r.1
for
107174240
gma-u.5
for
100775626
vvi-u.5
for
100253985
mtr-u.5
for
25489737
sly-u.5
for
101266932
sot-r.1
for
102581455
nta-r.1
for
107763155
nta-r.1
for
107814536
zma-u.5
for
103641671
tae-r.2
for
123189264
tae-r.2
for
123053361
hvu-r.1
for
123426770
sbi-r.1
for
8080316
bdi-r.1
for
100844847


Ortholog ID: 10117
Species bra bna bna ath ghi ghi cit gma vvi mtr sly sot nta nta zma tae tae hvu sbi bdi
Symbol LOC103846352 LOC106413251 LOC106360378 AT3G26540 LOC107949522 LOC107890139 LOC107174240 LOC100775626 LOC100253985 LOC25489737 LOC101266932 LOC102581455 LOC107763155 LOC107814536 LOC103641671 LOC123189264 LOC123053361 LOC123426770 LOC8080316 LOC100844847
Function* pentatricopeptide repeat-containing protein At3g26540 pentatricopeptide repeat-containing protein At3g26540 pentatricopeptide repeat-containing protein At3g26540-like Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At3g26540 pentatricopeptide repeat-containing protein At3g26540 pentatricopeptide repeat-containing protein At3g26540 pentatricopeptide repeat-containing protein At3g26540 pentatricopeptide repeat-containing protein At3g26540 pentatricopeptide repeat-containing protein At3g26540 pentatricopeptide repeat-containing protein At3g26540 pentatricopeptide repeat-containing protein At3g26540 pentatricopeptide repeat-containing protein At3g26540-like pentatricopeptide repeat-containing protein At3g26540-like pentatricopeptide repeat-containing protein At3g26540 pentatricopeptide repeat-containing protein At3g26540 pentatricopeptide repeat-containing protein At3g26540 pentatricopeptide repeat-containing protein At3g26540 pentatricopeptide repeat-containing protein At3g26540 pentatricopeptide repeat-containing protein At3g26540
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
bra03018 RNA degradation 2
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03030 DNA replication 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103846352 106413251 106360378 822262 107949522 107890139 107174240 100775626 100253985 25489737 101266932 102581455 107763155 107814536 103641671 123189264 123053361 123426770 8080316 100844847
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