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Orthologous genes in OrthoFinder**

Species Gene Description
 cit-r.1  107174240  pentatricopeptide repeat-containing protein At3g26540 
 ath-u.5  AT3G26540  Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5  100775626  pentatricopeptide repeat-containing protein At3g26540 
 vvi-u.5  100253985  pentatricopeptide repeat-containing protein At3g26540 
 mtr-u.5  25489737  pentatricopeptide repeat-containing protein At3g26540 
 sly-u.5  101266932  pentatricopeptide repeat-containing protein At3g26540 
 zma-u.5  103641671  pentatricopeptide repeat-containing protein At3g26540 

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Top 50 coexpressed genes to 107174240 (cit-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107174240 (cit-r.1 coexpression data)

CoexMap"107174240"


citLOC107174240 | Entrez gene ID : 107174240
Species cit ath gma vvi mtr sly zma bdi hvu bra bna ppo sbi ghi osa sot nta cre tae
Paralog 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (369 genes)  IEA  
GO CC
GO:0043231 [list] [network] intracellular membrane-bounded organelle  (4772 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1117 genes)  IEA  
GO:0005515 [list] [network] protein binding  (3939 genes)  IEA  
Protein XP_015384172.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 2,  nucl 1,  cyto 1,  extr 1,  vacu 1,  E.R. 1,  cyto_nucl 1,  E.R._vacu 1,  cyto_E.R. 1  (predict for XP_015384172.2)
Subcellular
localization
TargetP
other 6  (predict for XP_015384172.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID
Other ID Link Target Reference

cit-r.1
for
107174240


ath-u.5
for
AT3G26540


gma-u.5
for
100775626


vvi-u.5
for
100253985


mtr-u.5
for
25489737


sly-u.5
for
101266932


zma-u.5
for
103641671



Ortholog ID: 10117
Species cit ath bra ghi ghi bna gma vvi mtr sly sot nta nta zma tae tae hvu sbi bdi
Symbol LOC107174240 AT3G26540 LOC103846352 LOC107949522 LOC107890139 LOC106360378 LOC100775626 LOC100253985 LOC25489737 LOC101266932 LOC102581455 LOC107814536 LOC107763155 LOC103641671 LOC123189264 LOC123053361 LOC123426770 LOC8080316 LOC100844847
Function* pentatricopeptide repeat-containing protein At3g26540 Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At3g26540 pentatricopeptide repeat-containing protein At3g26540 pentatricopeptide repeat-containing protein At3g26540 pentatricopeptide repeat-containing protein At3g26540-like pentatricopeptide repeat-containing protein At3g26540 pentatricopeptide repeat-containing protein At3g26540 pentatricopeptide repeat-containing protein At3g26540 pentatricopeptide repeat-containing protein At3g26540 pentatricopeptide repeat-containing protein At3g26540 pentatricopeptide repeat-containing protein At3g26540-like pentatricopeptide repeat-containing protein At3g26540-like pentatricopeptide repeat-containing protein At3g26540 pentatricopeptide repeat-containing protein At3g26540 pentatricopeptide repeat-containing protein At3g26540 pentatricopeptide repeat-containing protein At3g26540 pentatricopeptide repeat-containing protein At3g26540 pentatricopeptide repeat-containing protein At3g26540
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
bra03018 RNA degradation 2
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03030 DNA replication 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107174240 822262 103846352 107949522 107890139 106360378 100775626 100253985 25489737 101266932 102581455 107814536 107763155 103641671 123189264 123053361 123426770 8080316 100844847
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