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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103853498   YTH domain-containing protein 1 
 ath-u.5   AT4G11970   YTH family protein 
 gma-u.5   100784130   30-kDa cleavage and polyadenylation specificity factor 30 
 gma-u.5   100799369   30-kDa cleavage and polyadenylation specificity factor 30 
 vvi-u.5   100254803   uncharacterized LOC100254803 
 ppo-u.5   7490930   uncharacterized LOC7490930 
 sly-u.5   101247445   uncharacterized LOC101247445 
 sly-u.5   101247143   uncharacterized LOC101247143 
 sly-u.5   101246845   YTH domain-containing protein ECT3-like 

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Top 50 coexpressed genes to 103853498 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103853498 (bra-r.6 coexpression data)

CoexMap"103853498"


braLOC103853498 | Entrez gene ID : 103853498    
Species bra ath gma vvi ppo sly bdi mtr hvu cit bna sbi ghi osa sot nta cre tae zma
Paralog 1 1 2 1 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0048024 [list] [network] regulation of mRNA splicing, via spliceosome  (33 genes)  IEA  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (258 genes)  IEA  
GO CC
GO:0005654 [list] [network] nucleoplasm  (316 genes)  IEA  
GO MF
GO:1990247 [list] [network] N6-methyladenosine-containing RNA reader activity  (2 genes)  IEA  
GO:0003729 [list] [network] mRNA binding  (432 genes)  IEA  
Protein XP_009128644.1 [sequence] [blastp]
XP_009128645.1 [sequence] [blastp]
XP_009128646.1 [sequence] [blastp]
XP_009128648.1 [sequence] [blastp]
XP_033141508.1 [sequence] [blastp]
XP_033141509.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 2,  cysk_nucl 2,  nucl_plas 2  (predict for XP_009128644.1)
chlo 2,  nucl 1,  extr 1,  E.R. 1,  chlo_mito 1,  cysk_nucl 1,  cyto 1,  mito 1,  plas 1,  vacu 1,  mito_plas 1,  cyto_plas 1  (predict for XP_009128645.1)
nucl 4,  cyto 3,  chlo 1,  cyto_pero 1,  cyto_plas 1  (predict for XP_009128646.1)
nucl 8,  chlo 1,  cyto 1,  vacu 1  (predict for XP_009128648.1)
nucl 5,  cyto 3,  chlo 1,  vacu 1,  E.R. 1,  E.R._vacu 1  (predict for XP_033141508.1)
nucl 3,  golg 3,  cyto 1,  cysk_nucl 1,  chlo 1,  plas 1,  vacu 1,  E.R. 1,  E.R._vacu 1,  cyto_pero 1,  E.R._plas 1  (predict for XP_033141509.1)
Subcellular
localization
TargetP
other 9  (predict for XP_009128644.1)
other 9  (predict for XP_009128645.1)
other 9  (predict for XP_009128646.1)
other 9  (predict for XP_009128648.1)
other 9  (predict for XP_033141508.1)
other 9  (predict for XP_033141509.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103853498
ath-u.5
for
AT4G11970
gma-u.5
for
100784130
gma-u.5
for
100799369
vvi-u.5
for
100254803
ppo-u.5
for
7490930
sly-u.5
for
101247445
sly-u.5
for
101247143
sly-u.5
for
101246845


Ortholog ID: 12212
Species bra bna bna ath ghi ghi cit gma gma vvi ppo sly sly sot sot nta nta cre
Symbol LOC103853498 LOC106380571 LOC106390672 AT4G11970 LOC107930042 LOC107926972 LOC102622363 LOC100784130 LOC100799369 LOC100254803 LOC7490930 LOC101246845 LOC101247143 LOC102582785 LOC102583780 LOC107805037 LOC107796409 CHLRE_12g516400v5
Function* YTH domain-containing protein 1 YTH domain-containing protein 1 YTH domain-containing protein 1 YTH family protein YTH domain-containing protein 1 YTH domain-containing protein 1 uncharacterized LOC102622363 30-kDa cleavage and polyadenylation specificity factor 30 30-kDa cleavage and polyadenylation specificity factor 30 uncharacterized LOC100254803 uncharacterized LOC7490930 YTH domain-containing protein ECT3-like uncharacterized LOC101247143 uncharacterized LOC102582785 uncharacterized LOC102583780 uncharacterized LOC107805037 uncharacterized LOC107796409 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
ghi04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
ghi04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 3
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04016 MAPK signaling pathway - plant 2
vvi00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
sot03013 Nucleocytoplasmic transport 2
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
sot03013 Nucleocytoplasmic transport 2
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04626 Plant-pathogen interaction 2
nta04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103853498 106380571 106390672 826804 107930042 107926972 102622363 100784130 100799369 100254803 7490930 101246845 101247143 102582785 102583780 107805037 107796409 66055562
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