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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g516400v5   uncharacterized protein 
 ath-u.5   AT4G11970   YTH family protein 
 gma-u.5   100784130   30-kDa cleavage and polyadenylation specificity factor 30 
 gma-u.5   100799369   30-kDa cleavage and polyadenylation specificity factor 30 
 sly-u.5   101247445   uncharacterized LOC101247445 
 sly-u.5   101247143   uncharacterized LOC101247143 
 sly-u.5   101246845   YTH domain-containing protein ECT3-like 
 vvi-u.5   100254803   uncharacterized LOC100254803 
 ppo-u.5   7490930   uncharacterized LOC7490930 

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Top 50 coexpressed genes to CHLRE_12g516400v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g516400v5 (cre-r.1 coexpression data)

CoexMap"66055562"


creCHLRE_12g516400v5 | Entrez gene ID : 66055562    
Species cre ath gma sly vvi ppo sbi nta mtr osa bra cit hvu bdi sot zma tae bna ghi
Paralog 1 1 2 3 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0048024 [list] [network] regulation of mRNA splicing, via spliceosome  (13 genes)  IEA  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (103 genes)  IEA  
GO CC
GO:0005654 [list] [network] nucleoplasm  (152 genes)  IEA  
GO MF
GO:1990247 [list] [network] N6-methyladenosine-containing RNA reader activity  (1 genes)  IEA  
GO:0003729 [list] [network] mRNA binding  (109 genes)  IEA  
Protein XP_042918403.1 [sequence] [blastp]
XP_042918404.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 1,  mito 1,  plas 1,  pero 1,  cyto_pero 1,  mito_plas 1,  cyto_plas 1  (predict for XP_042918403.1)
nucl 7,  cyto 1,  mito 1,  plas 1,  pero 1,  cyto_pero 1,  mito_plas 1,  cyto_plas 1  (predict for XP_042918404.1)
Subcellular
localization
TargetP
other 9  (predict for XP_042918403.1)
other 9  (predict for XP_042918404.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g516400v5

.
ath-u.5
for
AT4G11970

.
gma-u.5
for
100784130

.
gma-u.5
for
100799369

.
sly-u.5
for
101247445

.
sly-u.5
for
101247143

.
sly-u.5
for
101246845

.
vvi-u.5
for
100254803

.
ppo-u.5
for
7490930

.


Ortholog ID: 12212
Species ath gma gma sly sly bra vvi ppo ghi ghi bna bna cre sot sot cit nta nta
Symbol AT4G11970 LOC100784130 LOC100799369 LOC101246845 LOC101247143 LOC103853498 LOC100254803 LOC7490930 LOC107930042 LOC107926972 LOC106380571 LOC106390672 CHLRE_12g516400v5 LOC102582785 LOC102583780 LOC102622363 LOC107805037 LOC107796409
Function* YTH family protein 30-kDa cleavage and polyadenylation specificity factor 30 30-kDa cleavage and polyadenylation specificity factor 30 YTH domain-containing protein ECT3-like uncharacterized LOC101247143 YTH domain-containing protein 1 uncharacterized LOC100254803 uncharacterized LOC7490930 YTH domain-containing protein 1 YTH domain-containing protein 1 YTH domain-containing protein 1 YTH domain-containing protein 1 uncharacterized protein uncharacterized LOC102582785 uncharacterized LOC102583780 uncharacterized LOC102622363 uncharacterized LOC107805037 uncharacterized LOC107796409
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 3
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04016 MAPK signaling pathway - plant 2
vvi00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
ghi04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
ghi04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
sot03013 Nucleocytoplasmic transport 2
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
sot03013 Nucleocytoplasmic transport 2
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04626 Plant-pathogen interaction 2
nta04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 826804 100784130 100799369 101246845 101247143 103853498 100254803 7490930 107930042 107926972 106380571 106390672 66055562 102582785 102583780 102622363 107805037 107796409
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