ATTED-II : GeneCoexpression result

Species	Gene	Description
bra-r.6	103859664	suppressor of RPS4-RLD 1
ath-u.5	SRFR1	Tetratricopeptide repeat (TPR)-like superfamily protein
gma-u.5	100815327	suppressor of RPS4-RLD 1
gma-u.5	100808879	suppressor of RPS4-RLD 1
gma-u.5	100803316	suppressor of RPS4-RLD 1
vvi-u.5	100264606	suppressor of RPS4-RLD 1
ppo-u.5	18101141	suppressor of RPS4-RLD 1
mtr-u.5	11411921	suppressor of RPS4-RLD 1
sly-u.5	101252448	suppressor of RPS4-RLD 1
osa-u.5	4342244	suppressor of RPS4-RLD 1
zma-u.5	103648284	suppressor of RPS4-RLD 1

functional annotation

KEGG

GO BP

GO:0045892 [list] [network] negative regulation of DNA-templated transcription

(113 genes)

IEA

GO CC

GO MF

GO:0005515 [list] [network] protein binding

(6277 genes)

IEA

Protein

XP_009135514.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, cyto 1, golg 1, chlo 1, mito 1, plas 1, E.R. 1, pero 1, chlo_mito 1, E.R._plas 1, mito_plas 1

(predict for XP_009135514.1)

Subcellular
localization
TargetP

other 7, mito 4

(predict for XP_009135514.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bra-r.6 for 103859664	ath-u.5 for SRFR1	gma-u.5 for 100815327	gma-u.5 for 100808879	gma-u.5 for 100803316	vvi-u.5 for 100264606	ppo-u.5 for 18101141	mtr-u.5 for 11411921	sly-u.5 for 101252448	osa-u.5 for 4342244	zma-u.5 for 103648284

Ortholog ID: 9627

Species

bra

bna

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

SRFR1

Function^*

suppressor of RPS4-RLD 1

suppressor of RPS4-RLD 1-like

suppressor of RPS4-RLD 1

Tetratricopeptide repeat (TPR)-like superfamily protein

suppressor of RPS4-RLD 1

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03083	Polycomb repressive complex	2
bra00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	5
ghi03013	Nucleocytoplasmic transport	4
ghi03015	mRNA surveillance pathway	4
ghi04141	Protein processing in endoplasmic reticulum	3
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	5
ghi03013	Nucleocytoplasmic transport	4
ghi03015	mRNA surveillance pathway	4
ghi04141	Protein processing in endoplasmic reticulum	3
ghi02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	3
gma04148	Efferocytosis	3
gma00562	Inositol phosphate metabolism	3
gma04070	Phosphatidylinositol signaling system	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	3
gma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03083	Polycomb repressive complex	2
vvi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	2
ppo03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	2
mtr04120	Ubiquitin mediated proteolysis	2
mtr03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03083	Polycomb repressive complex	2
sly03250	Viral life cycle - HIV-1	2
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00270	Cysteine and methionine metabolism	2
osa00480	Glutathione metabolism	2
osa01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03015	mRNA surveillance pathway	3
hvu04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03018	RNA degradation	2
bdi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03050	Proteasome	8
cre04141	Protein processing in endoplasmic reticulum	3

Expression

Expression pattern

Entrez Gene ID^*

103859664

106440740

106426864

829901

121209914

107900153

102617524

100808879

100815327

100264606

18101141

11411921

101252448

102598556

107800615

107791960

4342244

103648284

123052931

123188870

123426339

110432820

100841566

5715211

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 103859664 (bra-r.6 coexpression data)

Top 50 enrichment test to 103859664 (bra-r.6 coexpression data)


Species	bra	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	1	1	3	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 103859664 (bra-r.6 coexpression data)

Top 50 enrichment test to 103859664 (bra-r.6 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**