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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103866136   COP9 signalosome complex subunit 6b 
 bra-r.6   103845068   COP9 signalosome complex subunit 6a 
 bra-r.6   103861629   COP9 signalosome complex subunit 6b 
 bna-r.1   111212985   COP9 signalosome complex subunit 6a-like 
 bna-r.1   106445289   COP9 signalosome complex subunit 6b-like 
 ath-u.5   CSN6B   COP9 signalosome subunit 6B 
 ath-u.5   CSN6A   COP9 signalosome subunit 6A 
 ghi-r.1   107893551   COP9 signalosome complex subunit 6a 
 ghi-r.1   107920239   COP9 signalosome complex subunit 6a 
 ghi-r.1   107920323   COP9 signalosome complex subunit 6a 
 cit-r.1   102619095   COP9 signalosome complex subunit 6a 
 gma-u.5   100786026   COP9 signalosome complex subunit 6a 
 gma-u.5   100797079   COP9 signalosome complex subunit 6a 
 vvi-u.5   100246357   COP9 signalosome complex subunit 6a 
 ppo-u.5   18103578   COP9 signalosome complex subunit 6a 
 mtr-u.5   25488496   COP9 signalosome complex subunit 6a 
 sly-u.5   101259087   COP9 signalosome complex subunit 6a 
 sot-r.1   102584188   COP9 signalosome complex subunit 6a-like 
 nta-r.1   107824680   COP9 signalosome complex subunit 6a 
 nta-r.1   107780255   COP9 signalosome complex subunit 6a-like 
 nta-r.1   107770370   COP9 signalosome complex subunit 6a 
 osa-u.5   4345944   COP9 signalosome complex subunit 6-like 
 zma-u.5   100284689   COP9 signalosome complex subunit 6a 
 zma-u.5   100283126   uncharacterized LOC100283126 
 tae-r.2   123166148   COP9 signalosome complex subunit 6 
 tae-r.2   123162843   COP9 signalosome complex subunit 6 
 tae-r.2   123150993   COP9 signalosome complex subunit 6 
 hvu-r.1   123409568   COP9 signalosome complex subunit 6 
 sbi-r.1   8067010   COP9 signalosome complex subunit 6a 
 bdi-r.1   100836366   COP9 signalosome complex subunit 6a 
 cre-r.1   CHLRE_11g467647v5   uncharacterized protein 
 cre-r.1   CHLRE_11g467645v5   uncharacterized protein 

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Top 50 coexpressed genes to 103866136 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103866136 (bra-r.6 coexpression data)

CoexMap"103866136"


braLOC103866136 | Entrez gene ID : 103866136    
Species bra bna ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 2 2 3 1 2 1 1 1 1 1 3 1 2 3 1 1 1 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000338 [list] [network] protein deneddylation  (9 genes)  IEA  
GO CC
GO:0008180 [list] [network] COP9 signalosome  (20 genes)  IEA  
GO MF
GO:0008237 [list] [network] metallopeptidase activity  (127 genes)  IEA  
GO:0005515 [list] [network] protein binding  (6277 genes)  IEA  
Protein XP_009142263.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 4,  chlo 1  (predict for XP_009142263.2)
Subcellular
localization
TargetP
other 6,  chlo 4  (predict for XP_009142263.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103866136
bra-r.6
for
103845068
bra-r.6
for
103861629
bna-r.1
for
111212985
bna-r.1
for
106445289
ath-u.5
for
CSN6B
ath-u.5
for
CSN6A
ghi-r.1
for
107893551
ghi-r.1
for
107920239
ghi-r.1
for
107920323
cit-r.1
for
102619095
gma-u.5
for
100786026
gma-u.5
for
100797079
vvi-u.5
for
100246357
ppo-u.5
for
18103578
mtr-u.5
for
25488496
sly-u.5
for
101259087
sot-r.1
for
102584188
nta-r.1
for
107824680
nta-r.1
for
107780255
nta-r.1
for
107770370
osa-u.5
for
4345944
zma-u.5
for
100284689
zma-u.5
for
100283126
tae-r.2
for
123166148
tae-r.2
for
123162843
tae-r.2
for
123150993
hvu-r.1
for
123409568
sbi-r.1
for
8067010
bdi-r.1
for
100836366
cre-r.1
for
CHLRE_11g467647v5
cre-r.1
for
CHLRE_11g467645v5


Ortholog ID: 5352
Species bra bra bra bna bna ath ath ghi ghi ghi cit gma gma vvi ppo mtr sly sot nta nta nta osa zma zma tae tae tae hvu sbi bdi cre cre
Symbol LOC103866136 LOC103845068 LOC103861629 LOC106444170 LOC106437668 CSN6B CSN6A LOC107893551 LOC107920239 LOC107926123 LOC102619095 LOC100786026 LOC100797079 LOC100246357 LOC18103578 LOC25488496 LOC101259087 LOC102584188 LOC107824680 LOC107780255 LOC107770370 LOC4345944 LOC100284689 LOC100283126 LOC123166148 LOC123162843 LOC123150993 LOC123409568 LOC8067010 LOC100836366 CHLRE_11g467647v5 CHLRE_11g467645v5
Function* COP9 signalosome complex subunit 6b COP9 signalosome complex subunit 6a COP9 signalosome complex subunit 6b COP9 signalosome complex subunit 6b COP9 signalosome complex subunit 6a COP9 signalosome subunit 6B COP9 signalosome subunit 6A COP9 signalosome complex subunit 6a COP9 signalosome complex subunit 6a COP9 signalosome complex subunit 6a COP9 signalosome complex subunit 6a COP9 signalosome complex subunit 6a COP9 signalosome complex subunit 6a COP9 signalosome complex subunit 6a COP9 signalosome complex subunit 6a COP9 signalosome complex subunit 6a COP9 signalosome complex subunit 6a COP9 signalosome complex subunit 6a-like COP9 signalosome complex subunit 6a COP9 signalosome complex subunit 6a-like COP9 signalosome complex subunit 6a COP9 signalosome complex subunit 6-like COP9 signalosome complex subunit 6a uncharacterized LOC100283126 COP9 signalosome complex subunit 6 COP9 signalosome complex subunit 6 COP9 signalosome complex subunit 6 COP9 signalosome complex subunit 6 COP9 signalosome complex subunit 6a COP9 signalosome complex subunit 6a uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00260 Glycine, serine and threonine metabolism 2
bra01200 Carbon metabolism 2
bra01210 2-Oxocarboxylic acid metabolism 2
bra00190 Oxidative phosphorylation 2
bra01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 3
bra00195 Photosynthesis 2
bra00030 Pentose phosphate pathway 2
bra00710 Carbon fixation by Calvin cycle 2
bra01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00510 N-Glycan biosynthesis 4
bna00513 Various types of N-glycan biosynthesis 4
bna03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00190 Oxidative phosphorylation 7
bna04145 Phagosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 3
ath03040 Spliceosome 2
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 6
ghi00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00190 Oxidative phosphorylation 4
ghi04145 Phagosome 4
ghi00270 Cysteine and methionine metabolism 2
ghi00920 Sulfur metabolism 2
ghi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00190 Oxidative phosphorylation 4
ghi04145 Phagosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 7
cit01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 5
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 4
gma04120 Ubiquitin mediated proteolysis 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 6
ppo03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
nta03040 Spliceosome 2
nta00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01210 2-Oxocarboxylic acid metabolism 4
nta01230 Biosynthesis of amino acids 4
nta00020 Citrate cycle (TCA cycle) 2
nta01200 Carbon metabolism 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00190 Oxidative phosphorylation 6
zma00020 Citrate cycle (TCA cycle) 6
zma01200 Carbon metabolism 6
zma01210 2-Oxocarboxylic acid metabolism 6
zma00785 Lipoic acid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00190 Oxidative phosphorylation 3
zma03015 mRNA surveillance pathway 3
zma04382 Cornified envelope formation 3
zma00860 Porphyrin metabolism 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 4
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00190 Oxidative phosphorylation 5
hvu00510 N-Glycan biosynthesis 2
hvu00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 4
sbi03010 Ribosome 3
sbi04145 Phagosome 2
sbi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 3
bdi03040 Spliceosome 3
bdi03010 Ribosome 3
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 10
cre04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103866136 103845068 103861629 106444170 106437668 828749 835727 107893551 107920239 107926123 102619095 100786026 100797079 100246357 18103578 25488496 101259087 102584188 107824680 107780255 107770370 4345944 100284689 100283126 123166148 123162843 123150993 123409568 8067010 100836366 5724358 66055232
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