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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103869430   pre-mRNA-processing protein 40B 
 bra-r.6   103849529   pre-mRNA-processing protein 40A 
 bna-r.1   106411204   pre-mRNA-processing protein 40B-like 
 bna-r.1   111213818   pre-mRNA-processing protein 40A 
 bna-r.1   106375621   pre-mRNA-processing protein 40A 
 ath-u.5   PRP40B   pre-mRNA-processing protein 40B 
 ath-u.5   PRP40A   pre-mRNA-processing protein 40A 
 ghi-r.1   107898754   pre-mRNA-processing protein 40A 
 ghi-r.1   107945158   pre-mRNA-processing protein 40A 
 ghi-r.1   107938320   pre-mRNA-processing protein 40A 
 cit-r.1   102622302   pre-mRNA-processing protein 40A-like 
 cit-r.1   102623196   pre-mRNA-processing protein 40A-like 
 gma-u.5   100806019   pre-mRNA-processing protein 40A 
 gma-u.5   100819928   pre-mRNA-processing protein 40A 
 gma-u.5   100777778   pre-mRNA-processing protein 40A 
 vvi-u.5   100243779   pre-mRNA-processing protein 40A 
 ppo-u.5   7478754   pre-mRNA-processing protein 40A 
 ppo-u.5   7488856   pre-mRNA-processing protein 40A 
 ppo-u.5   7478673   pre-mRNA-processing protein 40A 
 mtr-u.5   25485314   pre-mRNA-processing protein 40A 
 mtr-u.5   25482046   pre-mRNA-processing protein 40A 
 sly-u.5   101267083   pre-mRNA-processing protein 40A 
 sly-u.5   101256011   pre-mRNA-processing protein 40A 
 sot-r.1   102586174   pre-mRNA-processing protein 40A-like 
 sot-r.1   102588653   pre-mRNA-processing protein 40A-like 
 nta-r.1   107826429   pre-mRNA-processing protein 40A 
 nta-r.1   107800638   pre-mRNA-processing protein 40A 
 nta-r.1   107803645   pre-mRNA-processing protein 40A 
 osa-u.5   4327802   pre-mRNA-processing protein 40A 
 zma-u.5   103651641   pre-mRNA-processing protein 40A 
 zma-u.5   103651644   pre-mRNA-processing protein 40A 
 tae-r.2   123131695   pre-mRNA-processing protein 40A 
 tae-r.2   123135517   pre-mRNA-processing protein 40A 
 tae-r.2   123143093   pre-mRNA-processing protein 40A 
 hvu-r.1   123402528   calcium-binding protein P-like 
 hvu-r.1   123406356   pre-mRNA-processing protein 40A-like 
 sbi-r.1   110433979   pre-mRNA-processing protein 40A 
 bdi-r.1   100825893   pre-mRNA-processing protein 40A 
 cre-r.1   CHLRE_07g351000v5   uncharacterized protein 

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Top 50 coexpressed genes to 103869430 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103869430 (bra-r.6 coexpression data)

CoexMap"103869430"


braLOC103869430 | Entrez gene ID : 103869430    
Species bra bna ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 3 2 3 2 3 1 3 2 2 2 3 1 2 3 2 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG brp03040 [list] [network] Spliceosome (434 genes)
GO BP
GO:0045292 [list] [network] mRNA cis splicing, via spliceosome  (31 genes)  IEA  
GO CC
GO:0005685 [list] [network] U1 snRNP  (42 genes)  IEA  
GO:0071004 [list] [network] U2-type prespliceosome  (45 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1857 genes)  IEA  
GO:0005515 [list] [network] protein binding  (6277 genes)  IEA  
Protein XP_009145759.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto_nucl 4,  chlo 2  (predict for XP_009145759.1)
Subcellular
localization
TargetP
chlo 5,  other 4  (predict for XP_009145759.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103869430
bra-r.6
for
103849529
bna-r.1
for
106411204
bna-r.1
for
111213818
bna-r.1
for
106375621
ath-u.5
for
PRP40B
ath-u.5
for
PRP40A
ghi-r.1
for
107898754
ghi-r.1
for
107945158
ghi-r.1
for
107938320
cit-r.1
for
102622302
cit-r.1
for
102623196
gma-u.5
for
100806019
gma-u.5
for
100819928
gma-u.5
for
100777778
vvi-u.5
for
100243779
ppo-u.5
for
7478754
ppo-u.5
for
7488856
ppo-u.5
for
7478673
mtr-u.5
for
25485314
mtr-u.5
for
25482046
sly-u.5
for
101267083
sly-u.5
for
101256011
sot-r.1
for
102586174
sot-r.1
for
102588653
nta-r.1
for
107826429
nta-r.1
for
107800638
nta-r.1
for
107803645
osa-u.5
for
4327802
zma-u.5
for
103651641
zma-u.5
for
103651644
tae-r.2
for
123131695
tae-r.2
for
123135517
tae-r.2
for
123143093
hvu-r.1
for
123402528
hvu-r.1
for
123406356
sbi-r.1
for
110433979
bdi-r.1
for
100825893
cre-r.1
for
CHLRE_07g351000v5


Ortholog ID: 4243
Species bra bra bna bna bna ath ath ghi ghi ghi cit cit gma gma gma vvi ppo ppo ppo mtr mtr sly sly sot sot nta nta nta osa zma zma tae tae tae hvu hvu sbi bdi cre
Symbol LOC103869430 LOC103849529 LOC106411204 LOC106408735 LOC106410777 PRP40B PRP40A LOC107898754 LOC107945158 LOC107938320 LOC102622302 LOC102623196 LOC100806019 LOC100777778 LOC100796870 LOC100243779 LOC7478754 LOC7488856 LOC7478673 LOC25485314 LOC25482046 LOC101267083 LOC101256011 LOC102586174 LOC102588653 LOC107826429 LOC107800638 LOC107797839 LOC4327802 LOC103651641 LOC103651644 LOC123131695 LOC123135517 LOC123143093 LOC123402528 LOC123406356 LOC110433979 LOC100825893 CHLRE_07g351000v5
Function* pre-mRNA-processing protein 40B pre-mRNA-processing protein 40A pre-mRNA-processing protein 40B-like pre-mRNA-processing protein 40B-like pre-mRNA-processing protein 40B pre-mRNA-processing protein 40B pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A-like pre-mRNA-processing protein 40A-like pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A-like pre-mRNA-processing protein 40A-like pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A calcium-binding protein P-like pre-mRNA-processing protein 40A-like pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 7
ath03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
ghi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03083 Polycomb repressive complex 2
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi03013 Nucleocytoplasmic transport 3
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
cit03013 Nucleocytoplasmic transport 2
cit03018 RNA degradation 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
cit03022 Basal transcription factors 2
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 4
mtr03040 Spliceosome 3
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 6
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta03082 ATP-dependent chromatin remodeling 4
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
nta03460 Fanconi anemia pathway 2
nta03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03022 Basal transcription factors 2
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
hvu03013 Nucleocytoplasmic transport 3
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
sbi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
bdi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 9
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103869430 103849529 106411204 106408735 106410777 821504 841057 107898754 107945158 107938320 102622302 102623196 100806019 100777778 100796870 100243779 7478754 7488856 7478673 25485314 25482046 101267083 101256011 102586174 102588653 107826429 107800638 107797839 4327802 103651641 103651644 123131695 123135517 123143093 123402528 123406356 110433979 100825893 5718067
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