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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   25482046   pre-mRNA-processing protein 40A 
 mtr-r.5   25482046   pre-mRNA-processing protein 40A 
 mtr-u.5   25485314   pre-mRNA-processing protein 40A 
 gma-u.5   100819928   pre-mRNA-processing protein 40A 
 gma-u.5   100806019   pre-mRNA-processing protein 40A 
 gma-u.5   100777778   pre-mRNA-processing protein 40A 
 ppo-u.5   7478754   pre-mRNA-processing protein 40A 
 ppo-u.5   7478673   pre-mRNA-processing protein 40A 
 ppo-u.5   7488856   pre-mRNA-processing protein 40A 
 ath-u.5   PRP40B   pre-mRNA-processing protein 40B 
 ath-u.5   PRP40A   pre-mRNA-processing protein 40A 
 vvi-u.5   100243779   pre-mRNA-processing protein 40A 
 sly-u.5   101267083   pre-mRNA-processing protein 40A 
 sly-u.5   101256011   pre-mRNA-processing protein 40A 
 osa-u.5   4327802   pre-mRNA-processing protein 40A 
 zma-u.5   103651644   pre-mRNA-processing protein 40A 
 zma-u.5   103651641   pre-mRNA-processing protein 40A 

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Top 50 coexpressed genes to 25482046 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 25482046 (mtr-u.5 coexpression data)

CoexMap"25482046"


mtrLOC25482046 | Entrez gene ID : 25482046      
Species mtr gma ppo ath vvi sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 3 3 3 2 1 2 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG mtr03040 [list] [network] Spliceosome (435 genes)
GO BP
GO:0045292 [list] [network] mRNA cis splicing, via spliceosome  (18 genes)  IEA  
GO CC
GO:0071004 [list] [network] U2-type prespliceosome  (13 genes)  IEA  
GO:0005685 [list] [network] U1 snRNP  (14 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1400 genes)  IEA  
GO:0005515 [list] [network] protein binding  (5045 genes)  IEA  
Protein XP_024631092.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 4  (predict for XP_024631092.1)
Subcellular
localization
TargetP
chlo 4  (predict for XP_024631092.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
25482046
mtr-r.5
for
25482046
mtr-u.5
for
25485314
gma-u.5
for
100819928
gma-u.5
for
100806019
gma-u.5
for
100777778
ppo-u.5
for
7478754
ppo-u.5
for
7478673
ppo-u.5
for
7488856
ath-u.5
for
PRP40B
ath-u.5
for
PRP40A
vvi-u.5
for
100243779
sly-u.5
for
101267083
sly-u.5
for
101256011
osa-u.5
for
4327802
zma-u.5
for
103651644
zma-u.5
for
103651641


Ortholog ID: 4243
Species mtr mtr gma gma ppo ppo ath ath bra bra vvi ghi ghi bna bna cit cit sly sly sot sot nta nta osa zma zma tae tae hvu hvu sbi bdi cre
Symbol LOC25485314 LOC25482046 LOC100777778 LOC100806019 LOC7488856 LOC7478673 PRP40B PRP40A LOC103849529 LOC103869430 LOC100243779 LOC107938320 LOC107898754 LOC106410777 LOC106408735 LOC102622302 LOC102623196 LOC101256011 LOC101267083 LOC102586174 LOC102588653 LOC107800638 LOC107797839 LOC4327802 LOC103651641 LOC103651644 LOC123135517 LOC123131695 LOC123406356 LOC123402528 LOC110433979 LOC100825893 CHLRE_07g351000v5
Function* pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A pre-mRNA-processing protein 40B pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A pre-mRNA-processing protein 40B pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A pre-mRNA-processing protein 40B pre-mRNA-processing protein 40B-like pre-mRNA-processing protein 40A-like pre-mRNA-processing protein 40A-like pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A-like pre-mRNA-processing protein 40A-like pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A-like calcium-binding protein P-like pre-mRNA-processing protein 40A pre-mRNA-processing protein 40A uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 4
mtr03040 Spliceosome 3
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 7
ath03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi03013 Nucleocytoplasmic transport 3
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
ghi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
cit03013 Nucleocytoplasmic transport 2
cit03018 RNA degradation 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
cit03022 Basal transcription factors 2
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 6
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
nta03460 Fanconi anemia pathway 2
nta03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03022 Basal transcription factors 2
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
hvu03013 Nucleocytoplasmic transport 3
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
sbi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
bdi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 9
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 25485314 25482046 100777778 100806019 7488856 7478673 821504 841057 103849529 103869430 100243779 107938320 107898754 106410777 106408735 102622302 102623196 101256011 101267083 102586174 102588653 107800638 107797839 4327802 103651641 103651644 123135517 123131695 123406356 123402528 110433979 100825893 5718067
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