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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103869554   pentatricopeptide repeat-containing protein At4g16470 
 bna-r.1   106421982   pentatricopeptide repeat-containing protein At4g16470-like 
 bna-r.1   106446359   pentatricopeptide repeat-containing protein At4g16470 
 ath-u.5   AT4G16470   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ghi-r.1   107901819   pentatricopeptide repeat-containing protein At4g16470 
 ghi-r.1   107962084   pentatricopeptide repeat-containing protein At4g16470 
 cit-r.1   102621433   thymidine kinase a 
 vvi-u.5   100262452   thymidine kinase 
 sly-u.5   101260595   thymidine kinase a-like 
 nta-r.1   107788438   pentatricopeptide repeat-containing protein At4g16470-like 
 nta-r.1   107804258   pentatricopeptide repeat-containing protein At4g16470-like 
 nta-r.1   107807865   uncharacterized LOC107807865 
 osa-u.5   4341572   pentatricopeptide repeat-containing protein At4g16470 

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Top 50 coexpressed genes to 103869554 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103869554 (bra-r.6 coexpression data)

CoexMap"103869554"


braLOC103869554 | Entrez gene ID : 103869554    
Species bra bna ath ghi cit vvi sly nta osa sot bdi tae ppo zma cre mtr sbi gma hvu
Paralog 1 2 1 2 1 1 1 3 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (422 genes)  IEA  
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1857 genes)  IEA  
GO:0005515 [list] [network] protein binding  (6277 genes)  IEA  
Protein XP_009145886.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 1,  mito 1,  cysk 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_009145886.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_009145886.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103869554
bna-r.1
for
106421982
bna-r.1
for
106446359
ath-u.5
for
AT4G16470
ghi-r.1
for
107901819
ghi-r.1
for
107962084
cit-r.1
for
102621433
vvi-u.5
for
100262452
sly-u.5
for
101260595
nta-r.1
for
107788438
nta-r.1
for
107804258
nta-r.1
for
107807865
osa-u.5
for
4341572


Ortholog ID: 11984
Species bra bna bna ath ghi ghi cit vvi sly nta nta nta osa
Symbol LOC103869554 LOC106421982 LOC106446359 AT4G16470 LOC107901819 LOC107962084 LOC102621433 LOC100262452 LOC101260595 LOC107788438 LOC107804258 LOC107807865 LOC4341572
Function* pentatricopeptide repeat-containing protein At4g16470 pentatricopeptide repeat-containing protein At4g16470-like pentatricopeptide repeat-containing protein At4g16470 Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At4g16470 pentatricopeptide repeat-containing protein At4g16470 thymidine kinase a thymidine kinase thymidine kinase a-like pentatricopeptide repeat-containing protein At4g16470-like pentatricopeptide repeat-containing protein At4g16470-like uncharacterized LOC107807865 pentatricopeptide repeat-containing protein At4g16470
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
bna00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03020 RNA polymerase 2
vvi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 3
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00480 Glutathione metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103869554 106421982 106446359 827345 107901819 107962084 102621433 100262452 101260595 107788438 107804258 107807865 4341572
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