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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   104649094   pentatricopeptide repeat-containing protein At2g37320 
 sly-r.6   104649094   pentatricopeptide repeat-containing protein At2g37320 
 ath-u.5   AT2G37320   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5   100813915   pentatricopeptide repeat-containing protein At2g37320 
 mtr-u.5   11435688   uncharacterized LOC11435688 
 osa-u.5   4350271   pentatricopeptide repeat-containing protein At2g37320 
 osa-u.5   4345023   pentatricopeptide repeat-containing protein At2g37320 
 zma-u.5   100274275   uncharacterized LOC100274275 
 zma-u.5   100193547   uncharacterized LOC100193547 

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Top 50 coexpressed genes to 104649094 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 104649094 (sly-u.5 coexpression data)

CoexMap"104649094"


slyLOC104649094 | Entrez gene ID : 104649094    
Species sly ath gma mtr osa zma sbi nta bra cre vvi cit hvu ppo bdi sot tae bna ghi
Paralog 2 1 1 1 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (280 genes)  IEA  
GO CC
GO:0043231 [list] [network] intracellular membrane-bounded organelle  (5687 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1208 genes)  IEA  
GO:0005515 [list] [network] protein binding  (3982 genes)  IEA  
Protein XP_025888700.2 [sequence] [blastp]
XP_025888701.2 [sequence] [blastp]
XP_025888702.2 [sequence] [blastp]
XP_069145038.1 [sequence] [blastp]
XP_069145039.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 3  (predict for XP_025888700.2)
cyto 6,  chlo 1,  plas 1,  nucl 1,  mito 1,  golg_plas 1,  cysk_plas 1,  E.R._plas 1  (predict for XP_025888701.2)
cyto 6,  chlo 1,  plas 1,  nucl 1,  mito 1,  golg_plas 1,  cysk_plas 1,  E.R._plas 1  (predict for XP_025888702.2)
cyto 6,  chlo 1,  plas 1,  nucl 1,  mito 1,  golg_plas 1,  cysk_plas 1,  E.R._plas 1  (predict for XP_069145038.1)
cyto 6,  nucl 3  (predict for XP_069145039.1)
Subcellular
localization
TargetP
other 9  (predict for XP_025888700.2)
other 7,  mito 3  (predict for XP_025888701.2)
other 7,  mito 3  (predict for XP_025888702.2)
other 7,  mito 3  (predict for XP_069145038.1)
other 9  (predict for XP_069145039.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
104649094

.
sly-r.6
for
104649094

.
ath-u.5
for
AT2G37320

.
gma-u.5
for
100813915

.
mtr-u.5
for
11435688

.
osa-u.5
for
4350271

.
osa-u.5
for
4345023

.
zma-u.5
for
100274275

.
zma-u.5
for
100193547

.


Ortholog ID: 6515
Species ath gma sly osa osa zma zma bra bra mtr tae hvu ghi ghi sbi sot cit bdi nta
Symbol AT2G37320 LOC100813915 LOC104649094 LOC4350271 LOC4345023 LOC100193547 LOC100274275 LOC103867206 LOC103865589 LOC11435688 LOC123149157 LOC123411941 LOC107918851 LOC107893892 LOC8060232 LOC102598140 LOC102607158 LOC100830919 LOC107764654
Function* Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At2g37320 pentatricopeptide repeat-containing protein At2g37320 pentatricopeptide repeat-containing protein At2g37320 pentatricopeptide repeat-containing protein At2g37320 uncharacterized LOC100193547 uncharacterized LOC100274275 pentatricopeptide repeat-containing protein At2g37320 pentatricopeptide repeat-containing protein At2g37320 uncharacterized LOC11435688 pentatricopeptide repeat-containing protein At2g37320 pentatricopeptide repeat-containing protein At2g37320-like pentatricopeptide repeat-containing protein At2g37320 pentatricopeptide repeat-containing protein At2g37320 pentatricopeptide repeat-containing protein At2g37320 pentatricopeptide repeat-containing protein At2g37320 pentatricopeptide repeat-containing protein At2g37320 pentatricopeptide repeat-containing protein At2g37320 pentatricopeptide repeat-containing protein At2g37320-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 4
zma00513 Various types of N-glycan biosynthesis 4
zma00510 N-Glycan biosynthesis 3
zma00514 Other types of O-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
bra03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 4
mtr04626 Plant-pathogen interaction 4
mtr04016 MAPK signaling pathway - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818309 100813915 104649094 4350271 4345023 100193547 100274275 103867206 103865589 11435688 123149157 123411941 107918851 107893892 8060232 102598140 102607158 100830919 107764654
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