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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   104877963   pentatricopeptide repeat-containing protein At3g53700, chloroplastic-like 
 vvi-r.5   104877963   pentatricopeptide repeat-containing protein At3g53700, chloroplastic-like 
 vvi-u.5   100247376   pentatricopeptide repeat-containing protein At1g79080, chloroplastic-like 
 ath-u.5   AT1G79080   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.5   102667121   pentatricopeptide repeat-containing protein At1g79080, chloroplastic 
 gma-u.5   100807983   pentatricopeptide repeat-containing protein At1g79080, chloroplastic 
 bra-r.6   103832386   pentatricopeptide repeat-containing protein At1g79080, chloroplastic 
 ppo-u.5   7480369   pentatricopeptide repeat-containing protein At1g79080, chloroplastic 
 ppo-u.5   7454990   pentatricopeptide repeat-containing protein At1g79080, chloroplastic 
 mtr-u.5   25487021   pentatricopeptide repeat-containing protein At1g79080, chloroplastic 
 ghi-r.1   107948485   pentatricopeptide repeat-containing protein At1g79080, chloroplastic 
 ghi-r.1   121227981   pentatricopeptide repeat-containing protein At1g79080, chloroplastic-like 
 ghi-r.1   107903832   pentatricopeptide repeat-containing protein At1g79080, chloroplastic 
 bna-r.1   125589190   pentatricopeptide repeat-containing protein At1g79080, chloroplastic-like 
 bna-r.1   106354765   pentatricopeptide repeat-containing protein At1g79080, chloroplastic 
 bna-r.1   125594923   pentatricopeptide repeat-containing protein At1g79080, chloroplastic-like 
 sly-u.5   101259766   pentatricopeptide repeat-containing protein At1g79080, chloroplastic 
 sot-r.1   102583838   pentatricopeptide repeat-containing protein At1g79080, chloroplastic 
 nta-r.1   107806282   uncharacterized LOC107806282 
 nta-r.1   107762517   uncharacterized LOC107762517 

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Top 50 coexpressed genes to 104877963 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 104877963 (vvi-u.5 coexpression data)

CoexMap"104877963"


vviLOC104877963 | Entrez gene ID : 104877963    
Species vvi ath gma bra ppo mtr ghi bna sly sot nta osa bdi cit tae zma sbi hvu cre
Paralog 3 1 2 1 2 1 3 3 1 1 2 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (4232 genes)  IEA  
Protein XP_010645847.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  cyto 1,  mito 1,  extr 1,  cyto_nucl 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_010645847.1)
Subcellular
localization
TargetP
other 7  (predict for XP_010645847.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
104877963
vvi-r.5
for
104877963
vvi-u.5
for
100247376
ath-u.5
for
AT1G79080
gma-u.5
for
102667121
gma-u.5
for
100807983
bra-r.6
for
103832386
ppo-u.5
for
7480369
ppo-u.5
for
7454990
mtr-u.5
for
25487021
ghi-r.1
for
107948485
ghi-r.1
for
121227981
ghi-r.1
for
107903832
bna-r.1
for
125589190
bna-r.1
for
106354765
bna-r.1
for
125594923
sly-u.5
for
101259766
sot-r.1
for
102583838
nta-r.1
for
107806282
nta-r.1
for
107762517


Ortholog ID: 12272
Species vvi vvi ath gma gma bra ppo ppo mtr ghi ghi ghi bna bna bna sly sot nta nta
Symbol LOC104877963 LOC100247376 AT1G79080 LOC102667121 LOC100807983 LOC103832386 LOC7480369 LOC7454990 LOC25487021 LOC107948485 LOC121227981 LOC107903832 LOC125589190 LOC106354765 LOC125594923 LOC101259766 LOC102583838 LOC107806282 LOC107762517
Function* pentatricopeptide repeat-containing protein At3g53700, chloroplastic-like pentatricopeptide repeat-containing protein At1g79080, chloroplastic-like Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At1g79080, chloroplastic pentatricopeptide repeat-containing protein At1g79080, chloroplastic pentatricopeptide repeat-containing protein At1g79080, chloroplastic pentatricopeptide repeat-containing protein At1g79080, chloroplastic pentatricopeptide repeat-containing protein At1g79080, chloroplastic pentatricopeptide repeat-containing protein At1g79080, chloroplastic pentatricopeptide repeat-containing protein At1g79080, chloroplastic pentatricopeptide repeat-containing protein At1g79080, chloroplastic-like pentatricopeptide repeat-containing protein At1g79080, chloroplastic pentatricopeptide repeat-containing protein At1g79080, chloroplastic-like pentatricopeptide repeat-containing protein At1g79080, chloroplastic pentatricopeptide repeat-containing protein At1g79080, chloroplastic-like pentatricopeptide repeat-containing protein At1g79080, chloroplastic pentatricopeptide repeat-containing protein At1g79080, chloroplastic uncharacterized LOC107806282 uncharacterized LOC107762517
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00240 Pyrimidine metabolism 2
bra01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00780 Biotin metabolism 2
ghi01240 Biosynthesis of cofactors 2
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 5
sot00710 Carbon fixation by Calvin cycle 4
sot01200 Carbon metabolism 4
sot01230 Biosynthesis of amino acids 4
sot00030 Pentose phosphate pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 104877963 100247376 844249 102667121 100807983 103832386 7480369 7454990 25487021 107948485 121227981 107903832 125589190 106354765 125594923 101259766 102583838 107806282 107762517
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