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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   104879018   transcription factor HY5 
 vvi-r.5   104879018   transcription factor HY5 
 vvi-m.5   104879018   transcription factor HY5 
 vvi-u.5   100261472   transcription factor HY5-like 
 ath-u.5   HYH   HY5-homolog 
 ath-u.5   HY5   Basic-leucine zipper (bZIP) transcription factor family protein 
 gma-u.5   STF2   transcription factor STF2 
 gma-u.5   BZIP36   bZIP transcription factor bZIP36 
 gma-u.5   BZIP69   bZIP transcription factor bZIP69 
 ppo-u.5   7459020   transcription factor HY5 
 ppo-u.5   7471583   transcription factor HY5 
 ppo-u.5   7477210   transcription factor HY5-like 
 mtr-u.5   25490432   cellulose synthase A catalytic subunit 1 [UDP-forming] 
 mtr-u.5   11420561   transcription factor HY5-like 
 sly-u.5   HY5   THY5 protein 
 osa-u.5   4328662   transcription factor HY5 
 osa-u.5   4327123   transcription factor HY5 
 zma-u.5   100286123   uncharacterized LOC100286123 
 zma-u.5   103634871   transcription factor HY5 
 zma-u.5   103638645   transcription factor HY5 

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Top 50 coexpressed genes to 104879018 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 104879018 (vvi-u.5 coexpression data)

CoexMap"104879018"


vviLOC104879018 | Entrez gene ID : 104879018      
Species vvi ath gma ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 4 2 3 3 2 1 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG vvi04712 [list] [network] Circadian rhythm - plant (44 genes)
GO BP
GO:0010218 [list] [network] response to far red light  (2 genes)  IEA  
GO:0010114 [list] [network] response to red light  (4 genes)  IEA  
GO:0010099 [list] [network] regulation of photomorphogenesis  (5 genes)  IEA  
GO:0010017 [list] [network] red or far-red light signaling pathway  (6 genes)  IEA  
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (126 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (2597 genes)  IEA  
GO MF
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (238 genes)  IEA  
Protein XP_010648648.1 [sequence] [blastp]
XP_010648650.1 [sequence] [blastp]
XP_019074928.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto_nucl 5  (predict for XP_010648648.1)
nucl 10  (predict for XP_010648650.1)
nucl 10  (predict for XP_019074928.1)
Subcellular
localization
TargetP
chlo 7  (predict for XP_010648648.1)
other 8  (predict for XP_010648650.1)
other 8  (predict for XP_019074928.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
104879018
vvi-r.5
for
104879018
vvi-m.5
for
104879018
vvi-u.5
for
100261472
ath-u.5
for
HYH
ath-u.5
for
HY5
gma-u.5
for
STF2
gma-u.5
for
BZIP36
gma-u.5
for
BZIP69
ppo-u.5
for
7459020
ppo-u.5
for
7471583
ppo-u.5
for
7477210
mtr-u.5
for
25490432
mtr-u.5
for
11420561
sly-u.5
for
HY5
osa-u.5
for
4328662
osa-u.5
for
4327123
zma-u.5
for
100286123
zma-u.5
for
103634871
zma-u.5
for
103638645


Ortholog ID: 2407
Species vvi vvi ath ath gma gma bra bra ppo ppo mtr mtr ghi ghi bna bna sly sot nta nta osa zma zma tae hvu hvu sbi sbi bdi bdi cre
Symbol LOC100261472 LOC104879018 HY5 HYH BZIP69 BZIP36 LOC103859717 LOC103850763 LOC7459020 LOC7477210 LOC25490432 LOC11420561 LOC107909196 LOC121219986 LOC106391328 LOC125609007 HY5 LOC102588526 LOC142179585 LOC107776843 LOC4327123 LOC103638645 LOC100286123 LOC123060540 LOC123402759 LOC123413561 LOC8082252 LOC8078473 LOC100839215 LOC100836913 CHLRE_06g310500v5
Function* transcription factor HY5-like transcription factor HY5 Basic-leucine zipper (bZIP) transcription factor family protein HY5-homolog bZIP transcription factor bZIP69 bZIP transcription factor bZIP36 transcription factor HY5-like transcription factor HY5 transcription factor HY5 transcription factor HY5-like cellulose synthase A catalytic subunit 1 [UDP-forming] transcription factor HY5-like transcription factor HY5 transcription factor HY5 transcription factor HY5 transcription factor HY5-like THY5 protein transcription factor HY5 transcription factor HY5-like transcription factor HY5 transcription factor HY5 transcription factor HY5 uncharacterized LOC100286123 transcription factor HY5 transcription factor HY5-like transcription factor HY5 transcription factor HY5 transcription factor HY5 transcription factor HY5 transcription factor HY5 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 2
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 2
ath04712 Circadian rhythm - plant 2
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 3
ath00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00230 Purine metabolism 2
gma00760 Nicotinate and nicotinamide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00710 Carbon fixation by Calvin cycle 2
ppo01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04712 Circadian rhythm - plant 3
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04626 Plant-pathogen interaction 2
mtr00500 Starch and sucrose metabolism 2
mtr00520 Amino sugar and nucleotide sugar metabolism 2
mtr01250 Biosynthesis of nucleotide sugars 2
mtr00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00760 Nicotinate and nicotinamide metabolism 4
ghi03420 Nucleotide excision repair 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi04712 Circadian rhythm - plant 2
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00760 Nicotinate and nicotinamide metabolism 4
ghi03420 Nucleotide excision repair 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi04712 Circadian rhythm - plant 2
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
bna04712 Circadian rhythm - plant 4
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 8
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 2
sot04712 Circadian rhythm - plant 2
sot00940 Phenylpropanoid biosynthesis 2
sot00941 Flavonoid biosynthesis 2
sot00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 4
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 8
tae04120 Ubiquitin mediated proteolysis 3
tae04141 Protein processing in endoplasmic reticulum 3
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00941 Flavonoid biosynthesis 4
hvu04712 Circadian rhythm - plant 3
hvu00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 3
sbi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00010 Glycolysis / Gluconeogenesis 2
bdi01200 Carbon metabolism 2
bdi01230 Biosynthesis of amino acids 2
bdi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00941 Flavonoid biosynthesis 4
bdi04712 Circadian rhythm - plant 2
bdi00940 Phenylpropanoid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100261472 104879018 830996 821027 778143 548004 103859717 103850763 7459020 7477210 25490432 11420561 107909196 121219986 106391328 125609007 543733 102588526 142179585 107776843 4327123 103638645 100286123 123060540 123402759 123413561 8082252 8078473 100839215 100836913 5716798
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