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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106349789   tRNA pseudouridine synthase A 
 bna-r.1   106418751   tRNA pseudouridine synthase A 
 bra-r.6   103833708   tRNA pseudouridine synthase A 
 ath-u.5   AT5G35400   Pseudouridine synthase family protein 
 ghi-r.1   107948450   tRNA pseudouridine synthase A 
 ghi-r.1   107899360   tRNA pseudouridine synthase A 
 cit-r.1   102622951   uncharacterized LOC102622951 
 gma-u.5   100789957   tRNA pseudouridine synthase A 
 vvi-u.5   100242086   uncharacterized LOC100242086 
 ppo-u.5   18107859   uncharacterized LOC18107859 
 mtr-u.5   11438456   tRNA pseudouridine synthase A 
 sly-u.5   101257579   uncharacterized LOC101257579 
 sot-r.1   102592314   tRNA pseudouridine synthase A 
 nta-r.1   107832631   uncharacterized LOC107832631 
 nta-r.1   107811800   uncharacterized LOC107811800 
 osa-u.5   4341760   uncharacterized LOC4341760 
 zma-u.5   100193161   pseudouridylate synthase 
 tae-r.2   123149289   tRNA pseudouridine synthase A 
 tae-r.2   123163813   tRNA pseudouridine synthase A 
 hvu-r.1   123407483   tRNA pseudouridine synthase A 
 sbi-r.1   8061580   tRNA pseudouridine synthase A 
 bdi-r.1   100821582   tRNA pseudouridine synthase A 
 cre-r.1   CHLRE_01g021900v5   uncharacterized protein 

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Top 50 coexpressed genes to 106349789 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106349789 (bna-r.1 coexpression data)

CoexMap"106349789"


bnaLOC106349789 | Entrez gene ID : 106349789    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 2 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0031119 [list] [network] tRNA pseudouridine synthesis  (20 genes)  IEA  
GO CC
GO MF
GO:0009982 [list] [network] pseudouridine synthase activity  (48 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (3852 genes)  IEA  
Protein XP_013645214.2 [sequence] [blastp]
XP_013645218.2 [sequence] [blastp]
XP_048594530.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 4,  chlo 2,  nucl 2,  cyto 2,  cyto_nucl 2  (predict for XP_013645214.2)
mito 4,  chlo 2,  nucl 2,  cyto 2,  cyto_nucl 2  (predict for XP_013645218.2)
chlo 3,  cyto 2,  mito 2,  plas 2,  mito_plas 2,  cyto_plas 2  (predict for XP_048594530.1)
Subcellular
localization
TargetP
mito 7,  other 5  (predict for XP_013645214.2)
mito 7,  other 5  (predict for XP_013645218.2)
mito 7,  other 5  (predict for XP_048594530.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106349789
bna-r.1
for
106418751
bra-r.6
for
103833708
ath-u.5
for
AT5G35400
ghi-r.1
for
107948450
ghi-r.1
for
107899360
cit-r.1
for
102622951
gma-u.5
for
100789957
vvi-u.5
for
100242086
ppo-u.5
for
18107859
mtr-u.5
for
11438456
sly-u.5
for
101257579
sot-r.1
for
102592314
nta-r.1
for
107832631
nta-r.1
for
107811800
osa-u.5
for
4341760
zma-u.5
for
100193161
tae-r.2
for
123149289
tae-r.2
for
123163813
hvu-r.1
for
123407483
sbi-r.1
for
8061580
bdi-r.1
for
100821582
cre-r.1
for
CHLRE_01g021900v5


Ortholog ID: 10334
Species bna bna bra ath ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae hvu sbi bdi cre
Symbol LOC106349789 LOC106418751 LOC103833708 AT5G35400 LOC107948450 LOC107899360 LOC102622951 LOC100789957 LOC100242086 LOC18107859 LOC11438456 LOC101257579 LOC102592314 LOC107832631 LOC107811800 LOC4341760 LOC100193161 LOC123149289 LOC123163813 LOC123407483 LOC8061580 LOC100821582 CHLRE_01g021900v5
Function* tRNA pseudouridine synthase A tRNA pseudouridine synthase A tRNA pseudouridine synthase A Pseudouridine synthase family protein tRNA pseudouridine synthase A tRNA pseudouridine synthase A uncharacterized LOC102622951 tRNA pseudouridine synthase A uncharacterized LOC100242086 uncharacterized LOC18107859 tRNA pseudouridine synthase A uncharacterized LOC101257579 tRNA pseudouridine synthase A uncharacterized LOC107832631 uncharacterized LOC107811800 uncharacterized LOC4341760 pseudouridylate synthase tRNA pseudouridine synthase A tRNA pseudouridine synthase A tRNA pseudouridine synthase A tRNA pseudouridine synthase A tRNA pseudouridine synthase A uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 5
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 3
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
bra03008 Ribosome biogenesis in eukaryotes 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 2
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 3
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
nta03040 Spliceosome 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 2
osa03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 11
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae03013 Nucleocytoplasmic transport 3
tae00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00480 Glutathione metabolism 3
hvu01200 Carbon metabolism 3
hvu00030 Pentose phosphate pathway 2
hvu01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00510 N-Glycan biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106349789 106418751 103833708 833501 107948450 107899360 102622951 100789957 100242086 18107859 11438456 101257579 102592314 107832631 107811800 4341760 100193161 123149289 123163813 123407483 8061580 100821582 66052027
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