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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   18107859   uncharacterized LOC18107859 
 ppo-r.4   18107859   uncharacterized LOC18107859 
 gma-u.5   100789957   tRNA pseudouridine synthase A 
 mtr-u.5   11438456   tRNA pseudouridine synthase A 
 ath-u.5   AT5G35400   Pseudouridine synthase family protein 
 vvi-u.5   100242086   uncharacterized LOC100242086 
 sly-u.5   101257579   uncharacterized LOC101257579 
 osa-u.5   4341760   uncharacterized LOC4341760 
 zma-u.5   100193161   pseudouridylate synthase 

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Top 50 coexpressed genes to 18107859 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 18107859 (ppo-u.5 coexpression data)

CoexMap"18107859"


ppoLOC18107859 | Entrez gene ID : 18107859    
Species ppo gma mtr ath vvi sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 2 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0031119 [list] [network] tRNA pseudouridine synthesis  (9 genes)  IEA  
GO CC
GO MF
GO:0009982 [list] [network] pseudouridine synthase activity  (21 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1480 genes)  IEA  
Protein XP_006372224.1 [sequence] [blastp]
XP_052305120.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  mito 2  (predict for XP_006372224.1)
chlo 7,  mito 2  (predict for XP_052305120.1)
Subcellular
localization
TargetP
mito 5,  chlo 3  (predict for XP_006372224.1)
mito 5,  chlo 3  (predict for XP_052305120.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
18107859
ppo-r.4
for
18107859
gma-u.5
for
100789957
mtr-u.5
for
11438456
ath-u.5
for
AT5G35400
vvi-u.5
for
100242086
sly-u.5
for
101257579
osa-u.5
for
4341760
zma-u.5
for
100193161


Ortholog ID: 10334
Species ppo gma mtr ath bra vvi ghi ghi bna bna cit sly sot nta nta osa zma tae hvu sbi bdi cre
Symbol LOC18107859 LOC100789957 LOC11438456 AT5G35400 LOC103833708 LOC100242086 LOC107948450 LOC107899360 LOC106418751 LOC106349789 LOC102622951 LOC101257579 LOC102592314 LOC107832631 LOC107811800 LOC4341760 LOC100193161 LOC123163813 LOC123407483 LOC8061580 LOC100821582 CHLRE_01g021900v5
Function* uncharacterized LOC18107859 tRNA pseudouridine synthase A tRNA pseudouridine synthase A Pseudouridine synthase family protein tRNA pseudouridine synthase A uncharacterized LOC100242086 tRNA pseudouridine synthase A tRNA pseudouridine synthase A tRNA pseudouridine synthase A tRNA pseudouridine synthase A uncharacterized LOC102622951 uncharacterized LOC101257579 tRNA pseudouridine synthase A uncharacterized LOC107832631 uncharacterized LOC107811800 uncharacterized LOC4341760 pseudouridylate synthase tRNA pseudouridine synthase A tRNA pseudouridine synthase A tRNA pseudouridine synthase A tRNA pseudouridine synthase A uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 2
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
bra03008 Ribosome biogenesis in eukaryotes 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 3
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 5
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 3
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
nta03040 Spliceosome 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 2
osa03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 11
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00480 Glutathione metabolism 3
hvu01200 Carbon metabolism 3
hvu00030 Pentose phosphate pathway 2
hvu01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00510 N-Glycan biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 18107859 100789957 11438456 833501 103833708 100242086 107948450 107899360 106418751 106349789 102622951 101257579 102592314 107832631 107811800 4341760 100193161 123163813 123407483 8061580 100821582 66052027
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