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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_01g021900v5   uncharacterized protein 
 ath-u.5   AT5G35400   Pseudouridine synthase family protein 
 gma-u.5   100789957   tRNA pseudouridine synthase A 
 sly-u.5   101257579   uncharacterized LOC101257579 
 osa-u.5   4341760   uncharacterized LOC4341760 
 zma-u.5   100193161   pseudouridylate synthase 
 vvi-u.5   100242086   uncharacterized LOC100242086 
 ppo-u.5   18107859   uncharacterized LOC18107859 
 mtr-u.5   11438456   tRNA pseudouridine synthase A 

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Top 50 coexpressed genes to CHLRE_01g021900v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_01g021900v5 (cre-r.1 coexpression data)

CoexMap"66052027"


creCHLRE_01g021900v5 | Entrez gene ID : 66052027    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0031119 [list] [network] tRNA pseudouridine synthesis  (8 genes)  IEA  
GO:1990481 [list] [network] mRNA pseudouridine synthesis  (8 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (2907 genes)  IEA  
GO MF
GO:0009982 [list] [network] pseudouridine synthase activity  (23 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_042928402.1 [sequence] [blastp]
Subcellular
localization
wolf
pero 3,  cyto 2,  extr 2,  chlo 1,  cyto_nucl 1  (predict for XP_042928402.1)
Subcellular
localization
TargetP
chlo 6,  other 5  (predict for XP_042928402.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_01g021900v5

.
ath-u.5
for
AT5G35400

.
gma-u.5
for
100789957

.
sly-u.5
for
101257579

.
osa-u.5
for
4341760

.
zma-u.5
for
100193161

.
vvi-u.5
for
100242086

.
ppo-u.5
for
18107859

.
mtr-u.5
for
11438456

.


Ortholog ID: 10334
Species ath gma sly osa zma bra vvi ppo mtr tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT5G35400 LOC100789957 LOC101257579 LOC4341760 LOC100193161 LOC103833708 LOC100242086 LOC18107859 LOC11438456 LOC123163813 LOC123407483 LOC107948450 LOC107899360 LOC106418751 LOC106349789 CHLRE_01g021900v5 LOC8061580 LOC102592314 LOC102622951 LOC100821582 LOC107832631 LOC107811800
Function* Pseudouridine synthase family protein tRNA pseudouridine synthase A uncharacterized LOC101257579 uncharacterized LOC4341760 pseudouridylate synthase tRNA pseudouridine synthase A uncharacterized LOC100242086 uncharacterized LOC18107859 tRNA pseudouridine synthase A tRNA pseudouridine synthase A tRNA pseudouridine synthase A tRNA pseudouridine synthase A tRNA pseudouridine synthase A tRNA pseudouridine synthase A tRNA pseudouridine synthase A uncharacterized protein tRNA pseudouridine synthase A tRNA pseudouridine synthase A uncharacterized LOC102622951 tRNA pseudouridine synthase A uncharacterized LOC107832631 uncharacterized LOC107811800
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 2
osa03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 11
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
bra03008 Ribosome biogenesis in eukaryotes 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 2
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00480 Glutathione metabolism 3
hvu01200 Carbon metabolism 3
hvu00030 Pentose phosphate pathway 2
hvu01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 3
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 5
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 3
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
nta03040 Spliceosome 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 833501 100789957 101257579 4341760 100193161 103833708 100242086 18107859 11438456 123163813 123407483 107948450 107899360 106418751 106349789 66052027 8061580 102592314 102622951 100821582 107832631 107811800
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