ATTED-II : GeneCoexpression result

Species	Gene	Description
bna-r.1	106357648	splicing factor 3B subunit 1-like
bna-r.1	106351917	splicing factor 3B subunit 1-like
bna-r.1	111204634	splicing factor 3B subunit 1-like
bna-r.1	111197962	splicing factor 3B subunit 1-like
bra-r.6	103873845	splicing factor 3B subunit 1
bra-r.6	103837520	splicing factor 3B subunit 1
ath-u.5	AT5G64270	splicing factor
ghi-r.1	107929017	splicing factor 3B subunit 1
ghi-r.1	107929397	splicing factor 3B subunit 1
cit-r.1	102613662	uncharacterized LOC102613662
gma-u.5	100810599	splicing factor 3B subunit 1
gma-u.5	100785889	splicing factor 3B subunit 1
vvi-u.5	100243186	uncharacterized LOC100243186
ppo-u.5	7461689	uncharacterized LOC7461689
ppo-u.5	7461262	uncharacterized LOC7461262
mtr-u.5	11424216	splicing factor 3B subunit 1
sly-u.5	101252641	uncharacterized LOC101252641
sot-r.1	107059135	splicing factor 3B subunit 1-like
sot-r.1	102582680	splicing factor 3B subunit 1
nta-r.1	107769132	uncharacterized LOC107769132
osa-u.5	4328284	uncharacterized LOC4328284
zma-u.5	103654921	splicing factor 3B subunit 1
zma-u.5	100277544	antigenic determinant of rec-A protein, mRNA
tae-r.2	123143769	splicing factor 3B subunit 1
tae-r.2	123136263	splicing factor 3B subunit 1
tae-r.2	123132227	splicing factor 3B subunit 1
hvu-r.1	123401091	splicing factor 3B subunit 1
sbi-r.1	8069963	splicing factor 3B subunit 1
bdi-r.1	100839729	splicing factor 3B subunit 1
bdi-r.1	100835688	splicing factor 3B subunit 1
cre-r.1	CHLRE_12g494100v5	uncharacterized protein

Annotation

functional annotation

KEGG

bna03040 [list] [network] Spliceosome (912 genes)

GO BP

GO:0000245 [list] [network] spliceosomal complex assembly

(58 genes)

IEA

GO CC

GO:0005689 [list] [network] U12-type spliceosomal complex	(61 genes)	IEA
GO:0005686 [list] [network] U2 snRNP	(88 genes)	IEA
GO:0071004 [list] [network] U2-type prespliceosome	(106 genes)	IEA
GO:0071013 [list] [network] catalytic step 2 spliceosome	(222 genes)	IEA

GO MF

GO:0003729 [list] [network] mRNA binding

(918 genes)

IEA

Protein

XP_013652780.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 9, cyto 1, E.R. 1, cyto_E.R. 1

(predict for XP_013652780.1)

Subcellular
localization
TargetP

other 8

(predict for XP_013652780.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106357648	bna-r.1 for 106351917	bna-r.1 for 111204634	bna-r.1 for 111197962	bra-r.6 for 103873845	bra-r.6 for 103837520	ath-u.5 for AT5G64270	ghi-r.1 for 107929017	ghi-r.1 for 107929397	cit-r.1 for 102613662	gma-u.5 for 100810599	gma-u.5 for 100785889	vvi-u.5 for 100243186	ppo-u.5 for 7461689	ppo-u.5 for 7461262	mtr-u.5 for 11424216	sly-u.5 for 101252641	sot-r.1 for 107059135	sot-r.1 for 102582680	nta-r.1 for 107769132	osa-u.5 for 4328284	zma-u.5 for 103654921	zma-u.5 for 100277544	tae-r.2 for 123143769	tae-r.2 for 123136263	tae-r.2 for 123132227	hvu-r.1 for 123401091	sbi-r.1 for 8069963	bdi-r.1 for 100839729	bdi-r.1 for 100835688	cre-r.1 for CHLRE_12g494100v5

Ortholog

Ortholog ID: 6687

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

splicing factor 3B subunit 1-like

splicing factor 3B subunit 1

splicing factor

splicing factor 3B subunit 1

uncharacterized LOC102613662

splicing factor 3B subunit 1

uncharacterized LOC100243186

uncharacterized LOC7461689

uncharacterized LOC7461262

splicing factor 3B subunit 1

uncharacterized LOC101252641

splicing factor 3B subunit 1-like

splicing factor 3B subunit 1

uncharacterized LOC107769132

uncharacterized LOC4328284

splicing factor 3B subunit 1

antigenic determinant of rec-A protein, mRNA

splicing factor 3B subunit 1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4
bna00562	Inositol phosphate metabolism	2
bna03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	5
bra04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3
ath03420	Nucleotide excision repair	2
ath04120	Ubiquitin mediated proteolysis	2
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	5
ghi00270	Cysteine and methionine metabolism	2
ghi04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	4
ghi00270	Cysteine and methionine metabolism	2
ghi04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	9
gma04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3
ppo04712	Circadian rhythm - plant	2
ppo03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	4
mtr00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	7
nta00480	Glutathione metabolism	2
nta03013	Nucleocytoplasmic transport	2
nta03030	DNA replication	2
nta03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	4
zma00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	6
zma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	8
cre03020	RNA polymerase	3
cre03420	Nucleotide excision repair	3

Expression

Expression pattern

Entrez Gene ID^*

106351917

111204634

111197962

103873845

103837520

836548

107929017

107929397

102613662

100810599

100785889

100243186

7461689

7461262

11424216

101252641

107059135

102582680

107769132

4328284

103654921

100277544

123136263

123132227

123110147

123401091

8069963

100839729

100835688

5726113

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 106357648 (bna-r.1 coexpression data)

Top 50 enrichment test to 106357648 (bna-r.1 coexpression data)


Species	bna	bra	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	1	2	1	2	1	2	1	1	2	1	1	2	3	1	1	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106357648 (bna-r.1 coexpression data)

Top 50 enrichment test to 106357648 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**