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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106359805   probable small nuclear ribonucleoprotein F 
 bna-r.1   106390055   probable small nuclear ribonucleoprotein F 
 bna-r.1   106441036   probable small nuclear ribonucleoprotein F 
 bra-r.6   103861944   probable small nuclear ribonucleoprotein F 
 bra-r.6   103834683   probable small nuclear ribonucleoprotein F 
 ath-u.5   RUXF   small nuclear ribonucleoprotein F 
 ath-u.5   AT2G14285   Small nuclear ribonucleoprotein family protein 
 ghi-r.1   107907486   probable small nuclear ribonucleoprotein F 
 ghi-r.1   107942735   probable small nuclear ribonucleoprotein F 
 cit-r.1   102609283   probable small nuclear ribonucleoprotein F 
 gma-u.5   100305783   probable small nuclear ribonucleoprotein F 
 gma-u.5   100499965   probable small nuclear ribonucleoprotein F 
 vvi-u.5   100263985   small nuclear ribonucleoprotein F-like 
 ppo-u.5   7461580   probable small nuclear ribonucleoprotein F 
 mtr-u.5   11428365   probable small nuclear ribonucleoprotein F 
 sly-u.5   101260491   probable small nuclear ribonucleoprotein F 
 sot-r.1   102600295   probable small nuclear ribonucleoprotein F 
 nta-r.1   107761142   putative small nuclear ribonucleoprotein F 
 nta-r.1   107812353   putative small nuclear ribonucleoprotein F 
 nta-r.1   107814947   putative small nuclear ribonucleoprotein F 
 osa-u.5   4328484   probable small nuclear ribonucleoprotein F 
 osa-u.5   4351052   probable small nuclear ribonucleoprotein F 
 zma-u.5   100284147   small nuclear ribonucleoprotein F 
 zma-u.5   100285502   small nuclear ribonucleoprotein F 
 tae-r.2   123136591   probable small nuclear ribonucleoprotein F 
 tae-r.2   123144104   probable small nuclear ribonucleoprotein F 
 tae-r.2   123149369   probable small nuclear ribonucleoprotein F 
 hvu-r.1   123411396   probable small nuclear ribonucleoprotein F 
 sbi-r.1   8077205   probable small nuclear ribonucleoprotein F 
 sbi-r.1   8078782   probable small nuclear ribonucleoprotein F 
 bdi-r.1   100841438   uncharacterized LOC100841438 
 bdi-r.1   100825892   probable small nuclear ribonucleoprotein F 
 cre-r.1   CHLRE_05g241300v5   uncharacterized protein 

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Top 50 coexpressed genes to 106359805 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106359805 (bna-r.1 coexpression data)

CoexMap"106359805"


bnaLOC106359805 | Entrez gene ID : 106359805    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 2 2 2 1 2 1 1 1 1 1 3 2 2 3 1 2 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03040 [list] [network] Spliceosome (912 genes)
GO BP
GO:0000387 [list] [network] spliceosomal snRNP assembly  (90 genes)  IEA  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (548 genes)  IEA  
GO CC
GO:0005685 [list] [network] U1 snRNP  (102 genes)  IEA  
GO:0071013 [list] [network] catalytic step 2 spliceosome  (222 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (3852 genes)  IEA  
Protein XP_013654890.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  cyto_nucl 5,  chlo 1,  nucl 1,  extr 1  (predict for XP_013654890.1)
Subcellular
localization
TargetP
other 8  (predict for XP_013654890.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106359805
bna-r.1
for
106390055
bna-r.1
for
106441036
bra-r.6
for
103861944
bra-r.6
for
103834683
ath-u.5
for
RUXF
ath-u.5
for
AT2G14285
ghi-r.1
for
107907486
ghi-r.1
for
107942735
cit-r.1
for
102609283
gma-u.5
for
100305783
gma-u.5
for
100499965
vvi-u.5
for
100263985
ppo-u.5
for
7461580
mtr-u.5
for
11428365
sly-u.5
for
101260491
sot-r.1
for
102600295
nta-r.1
for
107761142
nta-r.1
for
107812353
nta-r.1
for
107814947
osa-u.5
for
4328484
osa-u.5
for
4351052
zma-u.5
for
100284147
zma-u.5
for
100285502
tae-r.2
for
123136591
tae-r.2
for
123144104
tae-r.2
for
123149369
hvu-r.1
for
123411396
sbi-r.1
for
8077205
sbi-r.1
for
8078782
bdi-r.1
for
100841438
bdi-r.1
for
100825892
cre-r.1
for
CHLRE_05g241300v5


Ortholog ID: 4771
Species bna bna bna bra bra ath ath ghi ghi cit gma gma vvi ppo mtr sly sot nta nta nta osa osa zma zma tae tae tae hvu sbi sbi bdi bdi cre
Symbol LOC106390055 LOC106410289 LOC106441033 LOC103861944 LOC103834683 RUXF AT2G14285 LOC107907486 LOC107942735 LOC102609283 LOC100305783 LOC100499965 LOC100263985 LOC7461580 LOC11428365 LOC101260491 LOC102600295 LOC107812353 LOC107814947 LOC107820486 LOC4328484 LOC4351052 LOC100284147 LOC100285502 LOC123136591 LOC123149369 LOC123168768 LOC123411396 LOC8077205 LOC8078782 LOC100841438 LOC100825892 CHLRE_05g241300v5
Function* probable small nuclear ribonucleoprotein F probable small nuclear ribonucleoprotein F probable small nuclear ribonucleoprotein F probable small nuclear ribonucleoprotein F probable small nuclear ribonucleoprotein F small nuclear ribonucleoprotein F Small nuclear ribonucleoprotein family protein probable small nuclear ribonucleoprotein F probable small nuclear ribonucleoprotein F probable small nuclear ribonucleoprotein F probable small nuclear ribonucleoprotein F probable small nuclear ribonucleoprotein F small nuclear ribonucleoprotein F-like probable small nuclear ribonucleoprotein F probable small nuclear ribonucleoprotein F probable small nuclear ribonucleoprotein F probable small nuclear ribonucleoprotein F putative small nuclear ribonucleoprotein F putative small nuclear ribonucleoprotein F putative small nuclear ribonucleoprotein F probable small nuclear ribonucleoprotein F probable small nuclear ribonucleoprotein F small nuclear ribonucleoprotein F small nuclear ribonucleoprotein F probable small nuclear ribonucleoprotein F probable small nuclear ribonucleoprotein F probable small nuclear ribonucleoprotein F probable small nuclear ribonucleoprotein F probable small nuclear ribonucleoprotein F probable small nuclear ribonucleoprotein F uncharacterized LOC100841438 probable small nuclear ribonucleoprotein F uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
bna03008 Ribosome biogenesis in eukaryotes 5
bna04122 Sulfur relay system 2
bna03020 RNA polymerase 2
bna03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
bna03020 RNA polymerase 2
bna03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 8
bna03020 RNA polymerase 2
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
bra04141 Protein processing in endoplasmic reticulum 2
bra03040 Spliceosome 2
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra03010 Ribosome 3
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 7
ath03010 Ribosome 3
ath03018 RNA degradation 2
ath03020 RNA polymerase 2
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 12
ghi04120 Ubiquitin mediated proteolysis 6
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03040 Spliceosome 2
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 16
ghi04120 Ubiquitin mediated proteolysis 5
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 10
cit03040 Spliceosome 3
cit03020 RNA polymerase 2
cit03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 7
gma03010 Ribosome 6
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 8
gma03040 Spliceosome 7
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 8
vvi03040 Spliceosome 3
vvi03020 RNA polymerase 2
vvi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 13
ppo03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 7
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 13
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 8
sot03040 Spliceosome 3
sot00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 8
nta03030 DNA replication 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 13
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 13
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 9
osa03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 11
osa03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 7
zma03010 Ribosome 3
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 6
zma00190 Oxidative phosphorylation 3
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03420 Nucleotide excision repair 3
tae04120 Ubiquitin mediated proteolysis 3
tae04141 Protein processing in endoplasmic reticulum 3
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 9
tae03040 Spliceosome 5
tae03030 DNA replication 2
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 9
tae03040 Spliceosome 4
tae03030 DNA replication 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 7
sbi03010 Ribosome 4
sbi03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 7
sbi03010 Ribosome 4
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 3
bdi03040 Spliceosome 2
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 8
bdi03020 RNA polymerase 3
bdi03420 Nucleotide excision repair 3
bdi03010 Ribosome 3
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 15
cre03015 mRNA surveillance pathway 3
cre03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106390055 106410289 106441033 103861944 103834683 829145 5007874 107907486 107942735 102609283 100305783 100499965 100263985 7461580 11428365 101260491 102600295 107812353 107814947 107820486 4328484 4351052 100284147 100285502 123136591 123149369 123168768 123411396 8077205 8078782 100841438 100825892 5723257
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