ATTED-II : GeneCoexpression result

Species	Gene	Description
osa-u.5	4351052	probable small nuclear ribonucleoprotein F
osa-r.6	4351052	probable small nuclear ribonucleoprotein F
osa-m.8	4351052	probable small nuclear ribonucleoprotein F
osa-e.1	4351052	probable small nuclear ribonucleoprotein F
osa-u.5	4328484	probable small nuclear ribonucleoprotein F
zma-u.5	100284147	small nuclear ribonucleoprotein F
zma-u.5	100285502	small nuclear ribonucleoprotein F
ath-u.5	RUXF	small nuclear ribonucleoprotein F
ath-u.5	AT2G14285	Small nuclear ribonucleoprotein family protein
gma-u.5	100305783	probable small nuclear ribonucleoprotein F
gma-u.5	100499965	probable small nuclear ribonucleoprotein F
sly-u.5	101260491	probable small nuclear ribonucleoprotein F
vvi-u.5	100263985	small nuclear ribonucleoprotein F-like
ppo-u.5	7461580	probable small nuclear ribonucleoprotein F
mtr-u.5	11428365	probable small nuclear ribonucleoprotein F

Annotation

functional annotation

KEGG

osa03040 [list] [network] Spliceosome (204 genes)

GO BP

GO:0000387 [list] [network] spliceosomal snRNP assembly	(27 genes)	IEA
GO:0000398 [list] [network] mRNA splicing, via spliceosome	(162 genes)	IEA

GO CC

GO:0034715 [list] [network] pICln-Sm protein complex	(12 genes)	IEA
GO:0005685 [list] [network] U1 snRNP	(22 genes)	IEA
GO:0071013 [list] [network] catalytic step 2 spliceosome	(58 genes)	IEA

GO MF

GO:0003723 [list] [network] RNA binding

(1223 genes)

IEA

Protein

XP_015617232.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 5, chlo 2, nucl 1, extr 1, E.R. 1, golg 1

(predict for XP_015617232.1)

Subcellular
localization
TargetP

other 8

(predict for XP_015617232.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-u.5 for 4351052	osa-r.6 for 4351052	osa-m.8 for 4351052	osa-e.1 for 4351052	osa-u.5 for 4328484	zma-u.5 for 100284147	zma-u.5 for 100285502	ath-u.5 for RUXF	ath-u.5 for AT2G14285	gma-u.5 for 100305783	gma-u.5 for 100499965	sly-u.5 for 101260491	vvi-u.5 for 100263985	ppo-u.5 for 7461580	mtr-u.5 for 11428365

Ortholog

Ortholog ID: 4771

Species

osa

tae

hvu

bdi

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

RUXF

Function^*

probable small nuclear ribonucleoprotein F

uncharacterized LOC100841438

small nuclear ribonucleoprotein F

probable small nuclear ribonucleoprotein F

Small nuclear ribonucleoprotein family protein

small nuclear ribonucleoprotein F

probable small nuclear ribonucleoprotein F

small nuclear ribonucleoprotein F-like

probable small nuclear ribonucleoprotein F

putative small nuclear ribonucleoprotein F

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	9
osa03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	11
osa03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	9
tae03040	Spliceosome	4
tae03030	DNA replication	2
tae03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	9
tae03040	Spliceosome	5
tae03030	DNA replication	2
tae03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	8
bdi03020	RNA polymerase	3
bdi03420	Nucleotide excision repair	3
bdi03010	Ribosome	3
bdi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	3
bdi03040	Spliceosome	2
bdi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	6
zma00190	Oxidative phosphorylation	3
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	7
zma03010	Ribosome	3
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	7
sbi03010	Ribosome	4
sbi03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	7
sbi03010	Ribosome	4
sbi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	7
ath03010	Ribosome	3
ath03018	RNA degradation	2
ath03020	RNA polymerase	2
ath03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	7
gma03010	Ribosome	6
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	8
gma03040	Spliceosome	7
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	13
sly03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3
bra03010	Ribosome	3
bra00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	8
vvi03040	Spliceosome	3
vvi03020	RNA polymerase	2
vvi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	13
ppo03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	7
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	16
ghi04120	Ubiquitin mediated proteolysis	5
ghi03008	Ribosome biogenesis in eukaryotes	2
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	12
ghi04120	Ubiquitin mediated proteolysis	6
ghi03008	Ribosome biogenesis in eukaryotes	2
ghi03040	Spliceosome	2
ghi03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	5
bna03008	Ribosome biogenesis in eukaryotes	5
bna04122	Sulfur relay system	2
bna03020	RNA polymerase	2
bna03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	7
bna03020	RNA polymerase	2
bna03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	8
sot03040	Spliceosome	3
sot00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	10
cit03040	Spliceosome	3
cit03020	RNA polymerase	2
cit03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	8
nta03030	DNA replication	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	13
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	15
cre03015	mRNA surveillance pathway	3
cre03013	Nucleocytoplasmic transport	2

Expression

Expression pattern

Entrez Gene ID^*

4328484

4351052

123168768

123149369

123411396

100825892

100841438

100285502

100284147

8077205

8078782

5007874

829145

100305783

100499965

101260491

103834683

100263985

7461580

11428365

107942735

107907486

106390055

106410289

102600295

102609283

107812353

107814947

5723257

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 4351052 (osa-u.5 coexpression data)

Top 50 enrichment test to 4351052 (osa-u.5 coexpression data)


Species	osa	zma	ath	gma	sly	vvi	ppo	mtr	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	5	2	2	2	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 4351052 (osa-u.5 coexpression data)

Top 50 enrichment test to 4351052 (osa-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**