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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8077205   probable small nuclear ribonucleoprotein F 
 zma-u.5   100284147   small nuclear ribonucleoprotein F 
 zma-u.5   100285502   small nuclear ribonucleoprotein F 
 osa-u.5   4351052   probable small nuclear ribonucleoprotein F 
 osa-u.5   4328484   probable small nuclear ribonucleoprotein F 
 ath-u.5   RUXF   small nuclear ribonucleoprotein F 
 ath-u.5   AT2G14285   Small nuclear ribonucleoprotein family protein 
 gma-u.5   100499965   probable small nuclear ribonucleoprotein F 
 gma-u.5   100305783   probable small nuclear ribonucleoprotein F 
 sly-u.5   101260491   probable small nuclear ribonucleoprotein F 
 vvi-u.5   100263985   small nuclear ribonucleoprotein F-like 
 ppo-u.5   7461580   probable small nuclear ribonucleoprotein F 
 mtr-u.5   11428365   probable small nuclear ribonucleoprotein F 

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Top 50 coexpressed genes to 8077205 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8077205 (sbi-r.1 coexpression data)

CoexMap"8077205"


sbiLOC8077205 | Entrez gene ID : 8077205      
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 2 2 2 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03040 [list] [network] Spliceosome (208 genes)
GO BP
GO:0000387 [list] [network] spliceosomal snRNP assembly  (23 genes)  IEA  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (170 genes)  IEA  
GO CC
GO:0005685 [list] [network] U1 snRNP  (25 genes)  IEA  
GO:0071013 [list] [network] catalytic step 2 spliceosome  (61 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1243 genes)  IEA  
Protein XP_002453392.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 4,  cyto_E.R. 3,  extr 1,  golg 1  (predict for XP_002453392.1)
Subcellular
localization
TargetP
other 7  (predict for XP_002453392.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8077205

.
zma-u.5
for
100284147

.
zma-u.5
for
100285502

.
osa-u.5
for
4351052

.
osa-u.5
for
4328484

.
ath-u.5
for
RUXF

.
ath-u.5
for
AT2G14285

.
gma-u.5
for
100499965

.
gma-u.5
for
100305783

.
sly-u.5
for
101260491

.
vvi-u.5
for
100263985

.
ppo-u.5
for
7461580

.
mtr-u.5
for
11428365

.


Ortholog ID: 4771
Species ath ath gma gma sly osa osa zma zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot cit bdi bdi nta nta
Symbol AT2G14285 RUXF LOC100305783 LOC100499965 LOC101260491 LOC4328484 LOC4351052 LOC100285502 LOC100284147 LOC103834683 LOC100263985 LOC7461580 LOC11428365 LOC123168768 LOC123149369 LOC123411396 LOC107942735 LOC107907486 LOC106390055 LOC106410289 CHLRE_05g241300v5 LOC8077205 LOC8078782 LOC102600295 LOC102609283 LOC100825892 LOC100841438 LOC107812353 LOC107814947
Function* Small nuclear ribonucleoprotein family protein small nuclear ribonucleoprotein F probable small nuclear ribonucleoprotein F probable small nuclear ribonucleoprotein F probable small nuclear ribonucleoprotein F probable small nuclear ribonucleoprotein F probable small nuclear ribonucleoprotein F small nuclear ribonucleoprotein F small nuclear ribonucleoprotein F probable small nuclear ribonucleoprotein F small nuclear ribonucleoprotein F-like probable small nuclear ribonucleoprotein F probable small nuclear ribonucleoprotein F probable small nuclear ribonucleoprotein F probable small nuclear ribonucleoprotein F probable small nuclear ribonucleoprotein F probable small nuclear ribonucleoprotein F probable small nuclear ribonucleoprotein F probable small nuclear ribonucleoprotein F probable small nuclear ribonucleoprotein F uncharacterized protein probable small nuclear ribonucleoprotein F probable small nuclear ribonucleoprotein F probable small nuclear ribonucleoprotein F probable small nuclear ribonucleoprotein F probable small nuclear ribonucleoprotein F uncharacterized LOC100841438 putative small nuclear ribonucleoprotein F putative small nuclear ribonucleoprotein F
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 7
ath03010 Ribosome 3
ath03018 RNA degradation 2
ath03020 RNA polymerase 2
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 7
gma03010 Ribosome 6
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 8
gma03040 Spliceosome 7
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 13
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 9
osa03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 11
osa03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 6
zma00190 Oxidative phosphorylation 3
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 7
zma03010 Ribosome 3
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra03010 Ribosome 3
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 8
vvi03040 Spliceosome 3
vvi03020 RNA polymerase 2
vvi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 13
ppo03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 7
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 9
tae03040 Spliceosome 4
tae03030 DNA replication 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 9
tae03040 Spliceosome 5
tae03030 DNA replication 2
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 16
ghi04120 Ubiquitin mediated proteolysis 5
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 12
ghi04120 Ubiquitin mediated proteolysis 6
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03040 Spliceosome 2
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
bna03008 Ribosome biogenesis in eukaryotes 5
bna04122 Sulfur relay system 2
bna03020 RNA polymerase 2
bna03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
bna03020 RNA polymerase 2
bna03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 15
cre03015 mRNA surveillance pathway 3
cre03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 7
sbi03010 Ribosome 4
sbi03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 7
sbi03010 Ribosome 4
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 8
sot03040 Spliceosome 3
sot00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 10
cit03040 Spliceosome 3
cit03020 RNA polymerase 2
cit03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 8
bdi03020 RNA polymerase 3
bdi03420 Nucleotide excision repair 3
bdi03010 Ribosome 3
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 3
bdi03040 Spliceosome 2
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 8
nta03030 DNA replication 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 13
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5007874 829145 100305783 100499965 101260491 4328484 4351052 100285502 100284147 103834683 100263985 7461580 11428365 123168768 123149369 123411396 107942735 107907486 106390055 106410289 5723257 8077205 8078782 102600295 102609283 100825892 100841438 107812353 107814947
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