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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   RAD51D   DNA repair RAD51-like protein 
 ghi-r.1   107959080   DNA repair protein RAD51 homolog 4 
 ghi-r.1   107906167   DNA repair protein RAD51 homolog 4 
 gma-u.5   100780427   DNA repair protein RAD51 homolog 4-like 
 vvi-u.5   100257115   DNA repair protein RAD51 homolog 4 
 mtr-u.5   25492474   DNA repair protein RAD51 homolog 4 
 sly-u.5   101264490   DNA repair protein RAD51 homolog 4 
 nta-r.1   107785938   DNA repair protein RAD51 homolog 4-like 
 nta-r.1   107806596   DNA repair protein RAD51 homolog 4 
 osa-u.5   4346376   DNA repair protein RAD51 homolog 4 
 zma-u.5   100282783   uncharacterized LOC100282783 
 tae-r.2   100192176   DNA repair protein RAD51 homolog 4 
 bdi-r.1   100827134   DNA repair protein RAD51 homolog 4 
 cre-r.1   CHLRE_03g184651v5   uncharacterized protein 

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Top 50 coexpressed genes to RAD51D (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RAD51D (ath-u.5 coexpression data)

CoexMap"106362259"


bnaLOC106362259 | Entrez gene ID : 106362259    
Species ath ghi gma vvi mtr sly nta osa zma tae bdi cre hvu sot bna ppo sbi bra cit
Paralog 1 2 1 1 1 1 2 1 1 1 1 1 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03440 [list] [network] Homologous recombination (136 genes)
GO BP
GO:0042148 [list] [network] DNA strand invasion  (14 genes)  IEA  
GO:0007131 [list] [network] reciprocal meiotic recombination  (103 genes)  IEA  
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (307 genes)  IEA  
GO:0000723 [list] [network] telomere maintenance  (388 genes)  IEA  
GO CC
GO:0033063 [list] [network] Rad51B-Rad51C-Rad51D-XRCC2 complex  (9 genes)  IEA  
GO:0005813 [list] [network] centrosome  (106 genes)  IEA  
GO:0005657 [list] [network] replication fork  (213 genes)  IEA  
GO MF
GO:0000400 [list] [network] four-way junction DNA binding  (10 genes)  IEA  
GO:0140664 [list] [network] ATP-dependent DNA damage sensor activity  (59 genes)  IEA  
GO:0003697 [list] [network] single-stranded DNA binding  (274 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (5995 genes)  IEA  
Protein XP_013657569.1 [sequence] [blastp]
XP_013657570.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 2,  cyto 2,  golg 2,  cyto_nucl 2,  plas 1,  cyto_E.R. 1  (predict for XP_013657569.1)
cyto 4,  nucl 4,  cyto_E.R. 2,  chlo 1,  extr 1,  vacu 1  (predict for XP_013657570.1)
Subcellular
localization
TargetP
other 8  (predict for XP_013657569.1)
other 8  (predict for XP_013657570.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ath-u.5
for
RAD51D
ghi-r.1
for
107959080
ghi-r.1
for
107906167
gma-u.5
for
100780427
vvi-u.5
for
100257115
mtr-u.5
for
25492474
sly-u.5
for
101264490
nta-r.1
for
107785938
nta-r.1
for
107806596
osa-u.5
for
4346376
zma-u.5
for
100282783
tae-r.2
for
100192176
bdi-r.1
for
100827134
cre-r.1
for
CHLRE_03g184651v5


Ortholog ID: 11460
Species ath ghi ghi gma vvi mtr sly nta nta osa zma tae bdi cre
Symbol RAD51D LOC107959080 LOC107906167 LOC100780427 LOC100257115 LOC25492474 LOC101264490 LOC107785938 LOC107806596 LOC4346376 LOC100282783 LOC100192176 LOC100827134 CHLRE_03g184651v5
Function* DNA repair RAD51-like protein DNA repair protein RAD51 homolog 4 DNA repair protein RAD51 homolog 4 DNA repair protein RAD51 homolog 4-like DNA repair protein RAD51 homolog 4 DNA repair protein RAD51 homolog 4 DNA repair protein RAD51 homolog 4 DNA repair protein RAD51 homolog 4-like DNA repair protein RAD51 homolog 4 DNA repair protein RAD51 homolog 4 uncharacterized LOC100282783 DNA repair protein RAD51 homolog 4 DNA repair protein RAD51 homolog 4 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 9
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04144 Endocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837289 107959080 107906167 100780427 100257115 25492474 101264490 107785938 107806596 4346376 100282783 100192176 100827134 5717423
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