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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   RAD51D   DNA repair RAD51-like protein 
 ath-r.7   RAD51D   DNA repair RAD51-like protein 
 ath-m.9   RAD51D   DNA repair RAD51-like protein 
 ath-e.2   RAD51D   DNA repair RAD51-like protein 
 ath-m.4.bio   RAD51D   DNA repair RAD51-like protein 
 ath-m.4.hor   RAD51D   DNA repair RAD51-like protein 
 ath-m.4.lig   RAD51D   DNA repair RAD51-like protein 
 ath-m.4.str   RAD51D   DNA repair RAD51-like protein 
 ath-m.4.tis   RAD51D   DNA repair RAD51-like protein 
 gma-u.5   100780427   DNA repair protein RAD51 homolog 4-like 
 vvi-u.5   100257115   DNA repair protein RAD51 homolog 4 
 mtr-u.5   25492474   DNA repair protein RAD51 homolog 4 
 sly-u.5   101264490   DNA repair protein RAD51 homolog 4 
 osa-u.5   4346376   DNA repair protein RAD51 homolog 4 
 zma-u.5   100282783   uncharacterized LOC100282783 

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Top 50 coexpressed genes to RAD51D (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RAD51D (ath-u.5 coexpression data)

CoexMap"837289"


athRAD51D | Entrez gene ID : 837289      
Species ath gma vvi mtr sly osa zma tae hvu ghi bdi cit bra cre sbi ppo bna nta sot
Paralog 9 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03440 [list] [network] Homologous recombination (60 genes)
GO BP
GO:0016444 [list] [network] somatic cell DNA recombination  (10 genes)  IMP  
GO:1900426 [list] [network] positive regulation of defense response to bacterium  (30 genes)  IMP  
GO:0006281 [list] [network] DNA repair  (203 genes)  IMP  
GO CC
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0140664 [list] [network] ATP-dependent DNA damage sensor activity  (9 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (321 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (1274 genes)  IEA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001077479.1 [sequence] [blastp]
NP_001322150.1 [sequence] [blastp]
NP_001322151.1 [sequence] [blastp]
NP_001322152.1 [sequence] [blastp]
NP_172254.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 2,  E.R._plas 2,  plas 1,  E.R. 1,  cysk_nucl 1  (predict for NP_001077479.1)
nucl 4,  cyto 2,  cyto_E.R. 2,  E.R._plas 1,  E.R. 1,  plas 1,  mito 1,  extr 1  (predict for NP_001322150.1)
nucl 6,  cyto 3,  cysk_nucl 3,  nucl_plas 3  (predict for NP_001322151.1)
nucl 6,  cyto 3,  cysk_nucl 3,  nucl_plas 3  (predict for NP_001322152.1)
nucl 5,  cyto 4,  extr 1,  vacu 1  (predict for NP_172254.2)
Subcellular
localization
TargetP
scret 6,  other 4  (predict for NP_001077479.1)
scret 6,  other 4  (predict for NP_001322150.1)
other 8  (predict for NP_001322151.1)
other 8  (predict for NP_001322152.1)
other 8  (predict for NP_172254.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
RAD51D

.
ath-r.7
for
RAD51D

.
ath-m.9
for
RAD51D

.
ath-e.2
for
RAD51D

.
ath-m.4.bio
for
RAD51D

.
ath-m.4.hor
for
RAD51D

.
ath-m.4.lig
for
RAD51D

.
ath-m.4.str
for
RAD51D

.
ath-m.4.tis
for
RAD51D

.
gma-u.5
for
100780427

.
vvi-u.5
for
100257115

.
mtr-u.5
for
25492474

.
sly-u.5
for
101264490

.
osa-u.5
for
4346376

.
zma-u.5
for
100282783

.


Ortholog ID: 11460
Species ath gma sly osa zma vvi mtr tae ghi ghi cre bdi nta nta
Symbol RAD51D LOC100780427 LOC101264490 LOC4346376 LOC100282783 LOC100257115 LOC25492474 LOC100192176 LOC107959080 LOC107906167 CHLRE_03g184651v5 LOC100827134 LOC107806596 LOC107785938
Function* DNA repair RAD51-like protein DNA repair protein RAD51 homolog 4-like DNA repair protein RAD51 homolog 4 DNA repair protein RAD51 homolog 4 uncharacterized LOC100282783 DNA repair protein RAD51 homolog 4 DNA repair protein RAD51 homolog 4 DNA repair protein RAD51 homolog 4 DNA repair protein RAD51 homolog 4 DNA repair protein RAD51 homolog 4 uncharacterized protein DNA repair protein RAD51 homolog 4 DNA repair protein RAD51 homolog 4 DNA repair protein RAD51 homolog 4-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 9
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837289 100780427 101264490 4346376 100282783 100257115 25492474 100192176 107959080 107906167 5717423 100827134 107806596 107785938
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