ATTED-II : GeneCoexpression result

Species	Gene	Description
bna-r.1	106424197	uncharacterized LOC106424197
bna-r.1	111212133	uncharacterized LOC111212133
bra-r.6	103834610	uncharacterized LOC103834610
bra-r.6	103842250	uncharacterized LOC103842250
ath-u.5	AT2G24530	transcriptional regulator of RNA polII, SAGA, subunit
ath-u.5	AT4G31440	transcriptional regulator of RNA polII, SAGA, subunit
ghi-r.1	107958329	uncharacterized LOC107958329
ghi-r.1	107932990	uncharacterized LOC107932990
ghi-r.1	107906774	uncharacterized LOC107906774
cit-r.1	107174604	uncharacterized LOC107174604
cit-r.1	102628352	uncharacterized LOC102628352
gma-u.5	100803746	uncharacterized LOC100803746
gma-u.5	100811524	uncharacterized LOC100811524
vvi-u.5	100852560	uncharacterized LOC100852560
vvi-u.5	104880381	uncharacterized LOC104880381
ppo-u.5	7476672	uncharacterized LOC7476672
ppo-u.5	7461331	uncharacterized LOC7461331
ppo-u.5	7476802	uncharacterized LOC7476802
mtr-u.5	120579462	uncharacterized LOC120579462
mtr-u.5	11425686	uncharacterized LOC11425686
sly-u.5	101254809	uncharacterized LOC101254809
sly-u.5	101249541	uncharacterized LOC101249541
sot-r.1	102582380	uncharacterized LOC102582380
sot-r.1	102594722	uncharacterized LOC102594722
nta-r.1	107792395	uncharacterized LOC107792395
nta-r.1	107809335	uncharacterized LOC107809335
nta-r.1	107810449	uncharacterized LOC107810449
osa-u.5	4337266	uncharacterized LOC4337266
zma-u.5	103645818	uncharacterized LOC103645818
zma-u.5	100275576	uncharacterized LOC100275576
tae-r.2	123054849	uncharacterized LOC123054849
tae-r.2	123190691	uncharacterized LOC123190691
tae-r.2	123047017	uncharacterized LOC123047017
hvu-r.1	123428071	uncharacterized LOC123428071
sbi-r.1	8070257	uncharacterized LOC8070257
bdi-r.1	100844231	uncharacterized LOC100844231

Annotation

functional annotation

KEGG

GO BP

GO:0006357 [list] [network] regulation of transcription by RNA polymerase II

(1371 genes)

IEA

GO CC

GO:0000124 [list] [network] SAGA complex

(54 genes)

IEA

GO MF

GO:0003713 [list] [network] transcription coactivator activity

(127 genes)

IEA

Protein

XP_013660730.2 [sequence] [blastp]
XP_048620975.1 [sequence] [blastp]
XP_048620976.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 8, chlo 1	(predict for XP_013660730.2)
nucl 8, chlo 1	(predict for XP_048620975.1)
nucl 8, chlo 1	(predict for XP_048620976.1)

Subcellular
localization
TargetP

other 9	(predict for XP_013660730.2)
other 9	(predict for XP_048620975.1)
other 9	(predict for XP_048620976.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106424197	bna-r.1 for 111212133	bra-r.6 for 103834610	bra-r.6 for 103842250	ath-u.5 for AT2G24530	ath-u.5 for AT4G31440	ghi-r.1 for 107958329	ghi-r.1 for 107932990	ghi-r.1 for 107906774	cit-r.1 for 107174604	cit-r.1 for 102628352	gma-u.5 for 100803746	gma-u.5 for 100811524	vvi-u.5 for 100852560	vvi-u.5 for 104880381	ppo-u.5 for 7476672	ppo-u.5 for 7461331	ppo-u.5 for 7476802	mtr-u.5 for 120579462	mtr-u.5 for 11425686	sly-u.5 for 101254809	sly-u.5 for 101249541	sot-r.1 for 102582380	sot-r.1 for 102594722	nta-r.1 for 107792395	nta-r.1 for 107809335	nta-r.1 for 107810449	osa-u.5 for 4337266	zma-u.5 for 103645818	zma-u.5 for 100275576	tae-r.2 for 123054849	tae-r.2 for 123190691	tae-r.2 for 123047017	hvu-r.1 for 123428071	sbi-r.1 for 8070257	bdi-r.1 for 100844231

Ortholog

Ortholog ID: 3201

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

uncharacterized BNAC03G67600D

uncharacterized LOC103842250

uncharacterized LOC103851844

transcriptional regulator of RNA polII, SAGA, subunit

uncharacterized LOC107958329

uncharacterized LOC107932990

uncharacterized LOC107902018

uncharacterized LOC107174604

uncharacterized LOC102628352

uncharacterized LOC100803746

uncharacterized LOC100811524

uncharacterized LOC100852560

uncharacterized LOC104880381

uncharacterized LOC7476672

uncharacterized LOC7476802

uncharacterized LOC18100755

uncharacterized LOC120579462

uncharacterized LOC11425686

uncharacterized LOC101254809

uncharacterized LOC101249541

uncharacterized LOC102582380

uncharacterized LOC102594722

uncharacterized LOC107792395

uncharacterized LOC107809335

uncharacterized LOC107815264

uncharacterized LOC4337266

uncharacterized LOC103645818

uncharacterized LOC100275576

uncharacterized LOC123054849

uncharacterized LOC123190691

uncharacterized LOC123047017

uncharacterized LOC123428071

uncharacterized LOC8070257

uncharacterized LOC100844231

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03083	Polycomb repressive complex	3
bra03250	Viral life cycle - HIV-1	3
bra03040	Spliceosome	2
bra03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03083	Polycomb repressive complex	2
bra03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00520	Amino sugar and nucleotide sugar metabolism	3
ath03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03083	Polycomb repressive complex	2
ghi00270	Cysteine and methionine metabolism	2
ghi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	3
vvi03082	ATP-dependent chromatin remodeling	2
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	5
sot00195	Photosynthesis	3
sot03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03022	Basal transcription factors	2
nta03040	Spliceosome	2
nta00561	Glycerolipid metabolism	2
nta00564	Glycerophospholipid metabolism	2
nta04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03022	Basal transcription factors	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03022	Basal transcription factors	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	2

Expression

Expression pattern

Entrez Gene ID^*

106390045

103842250

103851844

816989

829271

107958329

107932990

107902018

107174604

102628352

100803746

100811524

100852560

104880381

7476672

7476802

18100755

120579462

11425686

101254809

101249541

102582380

102594722

107792395

107809335

107815264

4337266

103645818

100275576

123054849

123190691

123047017

123428071

8070257

100844231

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 106424197 (bna-r.1 coexpression data)

Top 50 enrichment test to 106424197 (bna-r.1 coexpression data)


Species	bna	bra	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	2	2	2	3	2	2	2	3	2	2	2	3	1	2	3	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106424197 (bna-r.1 coexpression data)

Top 50 enrichment test to 106424197 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**