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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106366289   U1 small nuclear ribonucleoprotein 70 kDa-like 
 ath-u.5   U1-70K   U1 small nuclear ribonucleoprotein-70K 
 gma-u.5   100814484   U1 small nuclear ribonucleoprotein 70 kDa 
 gma-u.5   100800903   U1 small nuclear ribonucleoprotein 70 kDa 
 vvi-u.5   100244445   U1 small nuclear ribonucleoprotein 70 kDa 
 ppo-u.5   18099289   U1 small nuclear ribonucleoprotein 70 kDa 
 ppo-u.5   7473166   U1 small nuclear ribonucleoprotein 70 kDa 
 mtr-u.5   11405190   U1 small nuclear ribonucleoprotein 70 kDa 
 sly-u.5   101254653   U1 small nuclear ribonucleoprotein 70 kDa 
 osa-u.5   4347985   U1 small nuclear ribonucleoprotein 70 kDa 
 zma-u.5   542179   U1 snRNP 

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Top 50 coexpressed genes to 106366289 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106366289 (bna-r.1 coexpression data)

CoexMap"106366289"


bnaLOC106366289 | Entrez gene ID : 106366289    
Species bna ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae ghi
Paralog 1 1 2 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03040 [list] [network] Spliceosome (912 genes)
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (548 genes)  IEA  
GO CC
GO:0005685 [list] [network] U1 snRNP  (102 genes)  IEA  
GO:0071004 [list] [network] U2-type prespliceosome  (106 genes)  IEA  
GO:0071011 [list] [network] precatalytic spliceosome  (154 genes)  IEA  
GO MF
GO:0030619 [list] [network] U1 snRNA binding  (47 genes)  IEA  
GO:0003729 [list] [network] mRNA binding  (918 genes)  IEA  
Protein XP_013661330.2 [sequence] [blastp]
XP_048595504.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_013661330.2)
nucl 10  (predict for XP_048595504.1)
Subcellular
localization
TargetP
chlo 5,  other 5  (predict for XP_013661330.2)
chlo 5,  other 5  (predict for XP_048595504.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106366289

.
ath-u.5
for
U1-70K

.
gma-u.5
for
100814484

.
gma-u.5
for
100800903

.
vvi-u.5
for
100244445

.
ppo-u.5
for
18099289

.
ppo-u.5
for
7473166

.
mtr-u.5
for
11405190

.
sly-u.5
for
101254653

.
osa-u.5
for
4347985

.
zma-u.5
for
542179

.


Ortholog ID: 6898
Species ath gma gma sly osa zma bra vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna cre sbi sbi sot cit bdi bdi nta nta
Symbol U1-70K LOC100800903 LOC100814484 LOC101254653 LOC4347985 LOC542179 LOC103837710 LOC100244445 LOC7473166 LOC18099289 LOC11405190 LOC123042116 LOC123125080 LOC123434007 LOC123427951 LOC107914294 LOC107900632 LOC111211820 CHLRE_16g656250v5 LOC8083888 LOC8084932 LOC102601882 LOC102622406 LOC100845610 LOC100822879 LOC107759222 LOC107792003
Function* U1 small nuclear ribonucleoprotein-70K U1 small nuclear ribonucleoprotein 70 kDa U1 small nuclear ribonucleoprotein 70 kDa U1 small nuclear ribonucleoprotein 70 kDa U1 small nuclear ribonucleoprotein 70 kDa U1 snRNP U1 small nuclear ribonucleoprotein 70 kDa U1 small nuclear ribonucleoprotein 70 kDa U1 small nuclear ribonucleoprotein 70 kDa U1 small nuclear ribonucleoprotein 70 kDa U1 small nuclear ribonucleoprotein 70 kDa U1 small nuclear ribonucleoprotein 70 kDa U1 small nuclear ribonucleoprotein 70 kDa U1 small nuclear ribonucleoprotein 70 kDa-like U1 small nuclear ribonucleoprotein 70 kDa-like U1 small nuclear ribonucleoprotein 70 kDa U1 small nuclear ribonucleoprotein 70 kDa U1 small nuclear ribonucleoprotein 70 kDa uncharacterized protein U1 small nuclear ribonucleoprotein 70 kDa U1 small nuclear ribonucleoprotein 70 kDa U1 small nuclear ribonucleoprotein 70 kDa U1 small nuclear ribonucleoprotein 70 kDa U1 small nuclear ribonucleoprotein 70 kDa U1 small nuclear ribonucleoprotein 70 kDa U1 small nuclear ribonucleoprotein 70 kDa-like U1 small nuclear ribonucleoprotein 70 kDa
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 7
gma03013 Nucleocytoplasmic transport 3
gma03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 8
gma03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
bra03013 Nucleocytoplasmic transport 2
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 6
ppo03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 9
mtr03015 mRNA surveillance pathway 3
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
tae00071 Fatty acid degradation 2
tae00592 alpha-Linolenic acid metabolism 2
tae01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 10
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
bna03013 Nucleocytoplasmic transport 4
bna03015 mRNA surveillance pathway 4
bna03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 14
cre03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
sbi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 7
sot03013 Nucleocytoplasmic transport 2
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 7
cit03013 Nucleocytoplasmic transport 4
cit03015 mRNA surveillance pathway 3
cit03022 Basal transcription factors 2
cit03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 6
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 6
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
nta00240 Pyrimidine metabolism 2
nta01232 Nucleotide metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824230 100800903 100814484 101254653 4347985 542179 103837710 100244445 7473166 18099289 11405190 123042116 123125080 123434007 123427951 107914294 107900632 111211820 5723388 8083888 8084932 102601882 102622406 100845610 100822879 107759222 107792003
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