ATTED-II : GeneCoexpression result

Species	Gene	Description
bna-r.1	106372233	SWI/SNF complex component SNF12 homolog
ath-u.5	AT3G01890	SWIB/MDM2 domain superfamily protein
ath-u.5	CHC1	SWIB/MDM2 domain superfamily protein
gma-u.5	100817271	SWI/SNF complex component SNF12 homolog
gma-u.5	100802455	SWI/SNF complex component SNF12 homolog
gma-u.5	100790947	SWI/SNF complex component SNF12 homolog
vvi-u.5	100261825	SWI/SNF complex component SNF12 homolog
vvi-u.5	100250968	SWI/SNF complex component SNF12 homolog
ppo-u.5	18107230	SWI/SNF complex component SNF12 homolog
ppo-u.5	7454707	SWI/SNF complex component SNF12 homolog
ppo-u.5	7454548	SWI/SNF complex component SNF12 homolog
mtr-u.5	11405569	SWI/SNF complex component SNF12 homolog
mtr-u.5	25495726	SWI/SNF complex component SNF12 homolog
sly-u.5	101248354	SWI/SNF complex component SNF12 homolog
sly-u.5	101264507	SWI/SNF complex component SNF12 homolog
osa-u.5	4335638	SWI/SNF complex component SNF12 homolog
zma-u.5	103638113	SWI/SNF complex component SNF12 homolog
zma-u.5	109940767	SWI/SNF complex component SNF12 homolog
zma-u.5	100382816	uncharacterized LOC100382816

Annotation

functional annotation

KEGG

bna03082 [list] [network] ATP-dependent chromatin remodeling (198 genes)

GO BP

GO:0006357 [list] [network] regulation of transcription by RNA polymerase II

(1371 genes)

IEA

GO CC

GO:0016514 [list] [network] SWI/SNF complex	(14 genes)	IEA
GO:0005634 [list] [network] nucleus	(9971 genes)	IEA

GO MF

Protein

XP_048625151.1 [sequence] [blastp]
XP_048625152.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 9, nucl 1, pero 1	(predict for XP_048625151.1)
chlo 9, nucl 1, pero 1	(predict for XP_048625152.1)

Subcellular
localization
TargetP

chlo 6, other 4	(predict for XP_048625151.1)
chlo 6, other 4	(predict for XP_048625152.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106372233	ath-u.5 for AT3G01890	ath-u.5 for CHC1	gma-u.5 for 100817271	gma-u.5 for 100802455	gma-u.5 for 100790947	vvi-u.5 for 100261825	vvi-u.5 for 100250968	ppo-u.5 for 18107230	ppo-u.5 for 7454707	ppo-u.5 for 7454548	mtr-u.5 for 11405569	mtr-u.5 for 25495726	sly-u.5 for 101248354	sly-u.5 for 101264507	osa-u.5 for 4335638	zma-u.5 for 103638113	zma-u.5 for 109940767	zma-u.5 for 100382816

Ortholog

Ortholog ID: 3096

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

CHC1

Function^*

SWI/SNF complex component SNF12 homolog

SWIB/MDM2 domain superfamily protein

SWI/SNF complex component SNF12 homolog

uncharacterized LOC100382816

SWI/SNF complex component SNF12 homolog

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	4
ath03082	ATP-dependent chromatin remodeling	3
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03018	RNA degradation	2
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	2
gma00600	Sphingolipid metabolism	2
gma00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
gma01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	6
gma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	3
vvi03040	Spliceosome	3
vvi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03082	ATP-dependent chromatin remodeling	4
ppo03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2
ppo04144	Endocytosis	2
ppo03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	2
mtr03013	Nucleocytoplasmic transport	2
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03082	ATP-dependent chromatin remodeling	2
sly03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00230	Purine metabolism	2
sly03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03082	ATP-dependent chromatin remodeling	2
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	5
nta03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03082	ATP-dependent chromatin remodeling	3
tae04712	Circadian rhythm - plant	2
tae03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03082	ATP-dependent chromatin remodeling	3
tae03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00510	N-Glycan biosynthesis	2
hvu04141	Protein processing in endoplasmic reticulum	2
hvu00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03013	Nucleocytoplasmic transport	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	5
bdi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	2
cre03013	Nucleocytoplasmic transport	2

Expression

Expression pattern

Entrez Gene ID^*

111198021

106372233

103846505

103856064

831267

820093

107904814

121208437

102609965

102630009

100784907

100776562

100250968

100261825

7454548

18107230

11405569

101248354

101264507

102587176

102602635

107816546

107797351

4335638

109940767

100382816

123189035

123053127

123426518

8072202

100832204

5723870

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 106372233 (bna-r.1 coexpression data)

Top 50 enrichment test to 106372233 (bna-r.1 coexpression data)


Species	bna	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	sbi	ghi	sot	nta	cre	tae
Paralog	1	2	3	2	3	2	2	1	3	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106372233 (bna-r.1 coexpression data)

Top 50 enrichment test to 106372233 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**