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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106373094   general transcription and DNA repair factor IIH subunit TFB2 
 ath-u.5   AT4G17020   transcription factor-like protein 
 gma-u.5   100784255   general transcription and DNA repair factor IIH subunit TFB2 
 gma-u.5   100777843   general transcription and DNA repair factor IIH subunit TFB2 
 vvi-u.5   100258601   general transcription and DNA repair factor IIH subunit TFB2 
 ppo-u.5   7456803   general transcription and DNA repair factor IIH subunit TFB2 
 mtr-u.5   25493180   general transcription and DNA repair factor IIH subunit TFB2 
 mtr-u.5   11406173   general transcription and DNA repair factor IIH subunit TFB2 
 sly-u.5   101244148   general transcription and DNA repair factor IIH subunit TFB2 
 osa-u.5   4337426   general transcription and DNA repair factor IIH subunit TFB2 
 zma-u.5   103645755   general transcription and DNA repair factor IIH subunit TFB2 

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Top 50 coexpressed genes to 106373094 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106373094 (bna-r.1 coexpression data)

CoexMap"106373094"


bnaLOC106373094 | Entrez gene ID : 106373094    
Species bna ath gma vvi ppo mtr sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta
Paralog 1 1 2 1 1 2 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03022 [list] [network] Basal transcription factors (161 genes)
bna03420 [list] [network] Nucleotide excision repair (233 genes)
GO BP
GO:0006289 [list] [network] nucleotide-excision repair  (212 genes)  IEA  
GO CC
GO:0000439 [list] [network] transcription factor TFIIH core complex  (15 genes)  IEA  
GO:0005675 [list] [network] transcription factor TFIIH holo complex  (38 genes)  IEA  
GO MF
GO:0001671 [list] [network] ATPase activator activity  (23 genes)  IEA  
GO:0003690 [list] [network] double-stranded DNA binding  (1590 genes)  IEA  
Protein XP_048601845.1 [sequence] [blastp]
XP_048601846.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 4  (predict for XP_048601845.1)
cyto 5,  nucl 4  (predict for XP_048601846.1)
Subcellular
localization
TargetP
scret 9  (predict for XP_048601845.1)
scret 9  (predict for XP_048601846.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106373094

.
ath-u.5
for
AT4G17020

.
gma-u.5
for
100784255

.
gma-u.5
for
100777843

.
vvi-u.5
for
100258601

.
ppo-u.5
for
7456803

.
mtr-u.5
for
25493180

.
mtr-u.5
for
11406173

.
sly-u.5
for
101244148

.
osa-u.5
for
4337426

.
zma-u.5
for
103645755

.


Ortholog ID: 8539
Species ath gma gma sly osa zma bra vvi ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot cit cit bdi nta nta
Symbol AT4G17020 LOC100777843 LOC100784255 LOC101244148 LOC4337426 LOC103645755 LOC103868966 LOC100258601 LOC7456803 LOC11406173 LOC25493180 LOC123047439 LOC123191074 LOC123428317 LOC107925028 LOC107937757 LOC106437385 LOC106373094 CHLRE_09g403300v5 LOC8085882 LOC102597627 LOC102608810 LOC102607298 LOC100827851 LOC107781205 LOC107776685
Function* transcription factor-like protein general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 uncharacterized protein RNA polymerase II transcription factor B subunit 2 general transcription factor IIH subunit 4 general transcription and DNA repair factor IIH subunit TFB2-like general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 4
gma03015 mRNA surveillance pathway 2
gma04148 Efferocytosis 2
gma03022 Basal transcription factors 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly03013 Nucleocytoplasmic transport 2
sly03015 mRNA surveillance pathway 2
sly03022 Basal transcription factors 2
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 4
osa03022 Basal transcription factors 2
osa03420 Nucleotide excision repair 2
osa03430 Mismatch repair 2
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03022 Basal transcription factors 2
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03022 Basal transcription factors 3
mtr03420 Nucleotide excision repair 3
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03022 Basal transcription factors 3
mtr03420 Nucleotide excision repair 3
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
tae03022 Basal transcription factors 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 3
tae03420 Nucleotide excision repair 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00240 Pyrimidine metabolism 6
ghi01232 Nucleotide metabolism 6
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04142 Lysosome 5
bna03022 Basal transcription factors 2
bna03420 Nucleotide excision repair 2
bna04148 Efferocytosis 2
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04142 Lysosome 5
bna04144 Endocytosis 5
bna03022 Basal transcription factors 2
bna03420 Nucleotide excision repair 2
bna04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03022 Basal transcription factors 2
cre03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
cit03022 Basal transcription factors 2
cit03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03420 Nucleotide excision repair 3
cit03022 Basal transcription factors 2
cit03040 Spliceosome 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 3
nta03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 3
nta03420 Nucleotide excision repair 3
nta03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827410 100777843 100784255 101244148 4337426 103645755 103868966 100258601 7456803 11406173 25493180 123047439 123191074 123428317 107925028 107937757 106437385 106373094 5720743 8085882 102597627 102608810 102607298 100827851 107781205 107776685
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