Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107937757   general transcription and DNA repair factor IIH subunit TFB2 
 ath-u.5   AT4G17020   transcription factor-like protein 
 gma-u.5   100784255   general transcription and DNA repair factor IIH subunit TFB2 
 gma-u.5   100777843   general transcription and DNA repair factor IIH subunit TFB2 
 vvi-u.5   100258601   general transcription and DNA repair factor IIH subunit TFB2 
 ppo-u.5   7456803   general transcription and DNA repair factor IIH subunit TFB2 
 mtr-u.5   25493180   general transcription and DNA repair factor IIH subunit TFB2 
 mtr-u.5   11406173   general transcription and DNA repair factor IIH subunit TFB2 
 sly-u.5   101244148   general transcription and DNA repair factor IIH subunit TFB2 
 osa-u.5   4337426   general transcription and DNA repair factor IIH subunit TFB2 
 zma-u.5   103645755   general transcription and DNA repair factor IIH subunit TFB2 

close


Top 50 coexpressed genes to 107937757 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to 107937757 (ghi-r.1 coexpression data)

CoexMap"107937757"


ghiLOC107937757 | Entrez gene ID : 107937757    
Species ghi ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi sot nta cre tae
Paralog 1 1 2 1 1 2 1 1 1 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03022 [list] [network] Basal transcription factors (119 genes)
ghi03420 [list] [network] Nucleotide excision repair (188 genes)
GO BP
GO:0006289 [list] [network] nucleotide-excision repair  (79 genes)  IEA  
GO CC
GO:0000439 [list] [network] transcription factor TFIIH core complex  (11 genes)  IEA  
GO:0005675 [list] [network] transcription factor TFIIH holo complex  (32 genes)  IEA  
GO MF
GO:0001671 [list] [network] ATPase activator activity  (15 genes)  IEA  
GO:0003690 [list] [network] double-stranded DNA binding  (1296 genes)  IEA  
Protein XP_016726206.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  cyto_E.R. 4,  nucl 1,  chlo 1,  extr 1,  pero 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_016726206.1)
Subcellular
localization
TargetP
scret 8  (predict for XP_016726206.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107937757
ath-u.5
for
AT4G17020
gma-u.5
for
100784255
gma-u.5
for
100777843
vvi-u.5
for
100258601
ppo-u.5
for
7456803
mtr-u.5
for
25493180
mtr-u.5
for
11406173
sly-u.5
for
101244148
osa-u.5
for
4337426
zma-u.5
for
103645755


Ortholog ID: 8539
Species ghi ghi ath bra bna bna cit cit gma gma vvi ppo mtr mtr sly sot nta nta osa zma tae tae hvu sbi bdi cre
Symbol LOC107925028 LOC107937757 AT4G17020 LOC103868966 LOC106437385 LOC106373094 LOC102608810 LOC102607298 LOC100777843 LOC100784255 LOC100258601 LOC7456803 LOC11406173 LOC25493180 LOC101244148 LOC102597627 LOC107781205 LOC107776685 LOC4337426 LOC103645755 LOC123047439 LOC123191074 LOC123428317 LOC8085882 LOC100827851 CHLRE_09g403300v5
Function* general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 transcription factor-like protein general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2-like general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription factor IIH subunit 4 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 RNA polymerase II transcription factor B subunit 2 general transcription and DNA repair factor IIH subunit TFB2 uncharacterized protein
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00240 Pyrimidine metabolism 6
ghi01232 Nucleotide metabolism 6
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03022 Basal transcription factors 2
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04142 Lysosome 5
bna03022 Basal transcription factors 2
bna03420 Nucleotide excision repair 2
bna04148 Efferocytosis 2
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04142 Lysosome 5
bna04144 Endocytosis 5
bna03022 Basal transcription factors 2
bna03420 Nucleotide excision repair 2
bna04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
cit03022 Basal transcription factors 2
cit03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03420 Nucleotide excision repair 3
cit03022 Basal transcription factors 2
cit03040 Spliceosome 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 4
gma03015 mRNA surveillance pathway 2
gma04148 Efferocytosis 2
gma03022 Basal transcription factors 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03022 Basal transcription factors 3
mtr03420 Nucleotide excision repair 3
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03022 Basal transcription factors 3
mtr03420 Nucleotide excision repair 3
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly03013 Nucleocytoplasmic transport 2
sly03015 mRNA surveillance pathway 2
sly03022 Basal transcription factors 2
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 3
nta03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 3
nta03420 Nucleotide excision repair 3
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 4
osa03022 Basal transcription factors 2
osa03420 Nucleotide excision repair 2
osa03430 Mismatch repair 2
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
tae03022 Basal transcription factors 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 3
tae03420 Nucleotide excision repair 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03022 Basal transcription factors 2
cre03420 Nucleotide excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107925028 107937757 827410 103868966 106437385 106373094 102608810 102607298 100777843 100784255 100258601 7456803 11406173 25493180 101244148 102597627 107781205 107776685 4337426 103645755 123047439 123191074 123428317 8085882 100827851 5720743
The preparation time of this page was 0.1 [sec].