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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8085882   RNA polymerase II transcription factor B subunit 2 
 zma-u.5   103645755   general transcription and DNA repair factor IIH subunit TFB2 
 osa-u.5   4337426   general transcription and DNA repair factor IIH subunit TFB2 
 tae-r.2   123191074   general transcription and DNA repair factor IIH subunit TFB2 
 tae-r.2   123055239   general transcription and DNA repair factor IIH subunit TFB2 
 tae-r.2   123047439   general transcription and DNA repair factor IIH subunit TFB2 
 hvu-r.1   123428317   general transcription and DNA repair factor IIH subunit TFB2 
 bdi-r.1   100827851   general transcription and DNA repair factor IIH subunit TFB2 
 ath-u.5   AT4G17020   transcription factor-like protein 
 gma-u.5   100784255   general transcription and DNA repair factor IIH subunit TFB2 
 gma-u.5   100777843   general transcription and DNA repair factor IIH subunit TFB2 
 sly-u.5   101244148   general transcription and DNA repair factor IIH subunit TFB2 
 bra-r.6   103868966   general transcription and DNA repair factor IIH subunit TFB2 
 vvi-u.5   100258601   general transcription and DNA repair factor IIH subunit TFB2 
 ppo-u.5   7456803   general transcription and DNA repair factor IIH subunit TFB2 
 mtr-u.5   25493180   general transcription and DNA repair factor IIH subunit TFB2 
 mtr-u.5   11406173   general transcription and DNA repair factor IIH subunit TFB2 
 ghi-r.1   107937757   general transcription and DNA repair factor IIH subunit TFB2 
 ghi-r.1   107925028   general transcription and DNA repair factor IIH subunit TFB2 
 bna-r.1   106373094   general transcription and DNA repair factor IIH subunit TFB2 
 bna-r.1   106437385   general transcription and DNA repair factor IIH subunit TFB2 
 sot-r.1   102597627   general transcription factor IIH subunit 4 
 cit-r.1   102608810   general transcription and DNA repair factor IIH subunit TFB2-like 
 cit-r.1   102607298   general transcription and DNA repair factor IIH subunit TFB2 
 nta-r.1   107781205   general transcription and DNA repair factor IIH subunit TFB2 
 nta-r.1   107776685   general transcription and DNA repair factor IIH subunit TFB2 
 nta-r.1   107801525   general transcription and DNA repair factor IIH subunit TFB2 
 cre-r.1   CHLRE_09g403300v5   uncharacterized protein 

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Top 50 coexpressed genes to 8085882 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8085882 (sbi-r.1 coexpression data)

CoexMap"8085882"


sbiLOC8085882 | Entrez gene ID : 8085882      
Species sbi zma osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 1 1 1 3 1 1 1 2 1 1 1 1 2 2 2 1 2 3 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03022 [list] [network] Basal transcription factors (45 genes)
sbi03420 [list] [network] Nucleotide excision repair (89 genes)
GO BP
GO:0006289 [list] [network] nucleotide-excision repair  (48 genes)  IEA  
GO CC
GO:0000439 [list] [network] transcription factor TFIIH core complex  (6 genes)  IEA  
GO:0005675 [list] [network] transcription factor TFIIH holo complex  (11 genes)  IEA  
GO MF
GO:0001671 [list] [network] ATPase activator activity  (7 genes)  IEA  
GO:0003690 [list] [network] double-stranded DNA binding  (461 genes)  IEA  
Protein XP_002447335.1 [sequence] [blastp]
XP_021319824.1 [sequence] [blastp]
XP_021319825.1 [sequence] [blastp]
XP_021319826.1 [sequence] [blastp]
XP_021319827.1 [sequence] [blastp]
XP_021319828.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  cyto 4,  nucl 1,  cysk 1,  cysk_nucl 1  (predict for XP_002447335.1)
chlo 4,  cyto 4,  nucl 1,  cysk 1,  cysk_nucl 1  (predict for XP_021319824.1)
chlo 4,  cyto 4,  nucl 1,  cysk 1,  cysk_nucl 1  (predict for XP_021319825.1)
chlo 4,  cyto 4,  nucl 1,  cysk 1,  cysk_nucl 1  (predict for XP_021319826.1)
chlo 4,  cyto 4,  nucl 1,  cysk 1,  cysk_nucl 1  (predict for XP_021319827.1)
chlo 4,  cyto 4,  nucl 1,  cysk 1,  cysk_nucl 1  (predict for XP_021319828.1)
Subcellular
localization
TargetP
scret 8  (predict for XP_002447335.1)
scret 8  (predict for XP_021319824.1)
scret 8  (predict for XP_021319825.1)
scret 8  (predict for XP_021319826.1)
scret 8  (predict for XP_021319827.1)
scret 8  (predict for XP_021319828.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8085882
zma-u.5
for
103645755
osa-u.5
for
4337426
tae-r.2
for
123191074
tae-r.2
for
123055239
tae-r.2
for
123047439
hvu-r.1
for
123428317
bdi-r.1
for
100827851
ath-u.5
for
AT4G17020
gma-u.5
for
100784255
gma-u.5
for
100777843
sly-u.5
for
101244148
bra-r.6
for
103868966
vvi-u.5
for
100258601
ppo-u.5
for
7456803
mtr-u.5
for
25493180
mtr-u.5
for
11406173
ghi-r.1
for
107937757
ghi-r.1
for
107925028
bna-r.1
for
106373094
bna-r.1
for
106437385
sot-r.1
for
102597627
cit-r.1
for
102608810
cit-r.1
for
102607298
nta-r.1
for
107781205
nta-r.1
for
107776685
nta-r.1
for
107801525
cre-r.1
for
CHLRE_09g403300v5


Ortholog ID: 8539
Species sbi zma osa tae tae tae hvu bdi ath gma gma sly bra vvi ppo mtr mtr ghi ghi bna bna sot cit cit nta nta nta cre
Symbol LOC8085882 LOC103645755 LOC4337426 LOC123191074 LOC123055239 LOC123047439 LOC123428317 LOC100827851 AT4G17020 LOC100784255 LOC100777843 LOC101244148 LOC103868966 LOC100258601 LOC7456803 LOC25493180 LOC11406173 LOC107937757 LOC107925028 LOC106373094 LOC106437385 LOC102597627 LOC102608810 LOC102607298 LOC107781205 LOC107776685 LOC107801525 CHLRE_09g403300v5
Function* RNA polymerase II transcription factor B subunit 2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 transcription factor-like protein general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription factor IIH subunit 4 general transcription and DNA repair factor IIH subunit TFB2-like general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 general transcription and DNA repair factor IIH subunit TFB2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 4
osa03022 Basal transcription factors 2
osa03420 Nucleotide excision repair 2
osa03430 Mismatch repair 2
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 3
tae03420 Nucleotide excision repair 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
tae03022 Basal transcription factors 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
tae03022 Basal transcription factors 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 4
gma03015 mRNA surveillance pathway 2
gma04148 Efferocytosis 2
gma03022 Basal transcription factors 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly03013 Nucleocytoplasmic transport 2
sly03015 mRNA surveillance pathway 2
sly03022 Basal transcription factors 2
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03022 Basal transcription factors 2
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03022 Basal transcription factors 3
mtr03420 Nucleotide excision repair 3
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03022 Basal transcription factors 3
mtr03420 Nucleotide excision repair 3
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00240 Pyrimidine metabolism 6
ghi01232 Nucleotide metabolism 6
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04142 Lysosome 5
bna04144 Endocytosis 5
bna03022 Basal transcription factors 2
bna03420 Nucleotide excision repair 2
bna04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04142 Lysosome 5
bna03022 Basal transcription factors 2
bna03420 Nucleotide excision repair 2
bna04148 Efferocytosis 2
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
cit03022 Basal transcription factors 2
cit03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03420 Nucleotide excision repair 3
cit03022 Basal transcription factors 2
cit03040 Spliceosome 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 3
nta03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 3
nta03420 Nucleotide excision repair 3
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 3
nta03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03022 Basal transcription factors 2
cre03420 Nucleotide excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 8085882 103645755 4337426 123191074 123055239 123047439 123428317 100827851 827410 100784255 100777843 101244148 103868966 100258601 7456803 25493180 11406173 107937757 107925028 106373094 106437385 102597627 102608810 102607298 107781205 107776685 107801525 5720743
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