ATTED-II : GeneCoexpression result

Species	Gene	Description
bna-r.1	106376916	RNA-binding protein, mRNA-processing factor 2a
ath-u.5	AT3G21215	RNA-binding (RRM/RBD/RNP motifs) family protein
gma-u.5	100817421	U1 small nuclear ribonucleoprotein A
gma-u.5	100797865	RNA-binding protein mde7
vvi-u.5	100263943	cell wall integrity protein scw1
ppo-u.5	7491572	uncharacterized LOC7491572
ppo-u.5	7490860	uncharacterized LOC7490860
mtr-u.5	11419461	RNA-binding protein, mRNA-processing factor 2a
sly-u.5	101266614	RNA-binding (RRM/RBD/RNP motifs) family protein
osa-u.5	4345075	uncharacterized LOC4345075
zma-u.5	100283020	uncharacterized LOC100283020

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003729 [list] [network] mRNA binding

(918 genes)

IEA

Protein

XP_013672501.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9

(predict for XP_013672501.2)

Subcellular
localization
TargetP

chlo 6, other 3

(predict for XP_013672501.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106376916	ath-u.5 for AT3G21215	gma-u.5 for 100817421	gma-u.5 for 100797865	vvi-u.5 for 100263943	ppo-u.5 for 7491572	ppo-u.5 for 7490860	mtr-u.5 for 11419461	sly-u.5 for 101266614	osa-u.5 for 4345075	zma-u.5 for 100283020

Ortholog ID: 7588

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

RNA-binding protein, mRNA-processing factor 2a

U1 small nuclear ribonucleoprotein A-like

RNA-binding protein with multiple splicing

RNA-binding (RRM/RBD/RNP motifs) family protein

cell wall integrity protein scw1

uncharacterized LOC102624190

U1 small nuclear ribonucleoprotein A

RNA-binding protein mde7

cell wall integrity protein scw1

uncharacterized LOC7490860

uncharacterized LOC7491572

RNA-binding protein, mRNA-processing factor 2a

RNA-binding (RRM/RBD/RNP motifs) family protein

RNA-binding protein with multiple splicing

uncharacterized LOC107771023

uncharacterized LOC107762394

uncharacterized LOC4345075

uncharacterized LOC100283020

RNA-binding protein mde7

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4
bna03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3
gma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	3
vvi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	7
ppo03013	Nucleocytoplasmic transport	2
ppo03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	5
ppo03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03018	RNA degradation	2
sly03040	Spliceosome	2
sly04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	3
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	7
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03022	Basal transcription factors	3
tae03015	mRNA surveillance pathway	2
tae00960	Tropane, piperidine and pyridine alkaloid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03022	Basal transcription factors	3
tae03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	3
bdi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	8

Expression

Expression pattern

Entrez Gene ID^*

106365601

125580232

103835330

821675

107930408

107925052

102624190

100817421

100797865

100263943

7490860

7491572

11419461

101266614

102579827

107771023

107762394

4345075

100283020

123156669

123154627

123407378

8073260

100829014

5721640

5726262

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 106376916 (bna-r.1 coexpression data)

Top 50 enrichment test to 106376916 (bna-r.1 coexpression data)


Species	bna	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	sbi	ghi	sot	nta	cre	tae
Paralog	1	1	2	1	2	1	1	1	1	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106376916 (bna-r.1 coexpression data)

Top 50 enrichment test to 106376916 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**