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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   125580232   U1 small nuclear ribonucleoprotein A-like 
 bna-r.1   106365601   RNA-binding protein, mRNA-processing factor 2a 
 bna-r.1   106376916   RNA-binding protein, mRNA-processing factor 2a 
 bra-r.6   103835330   RNA-binding protein with multiple splicing 
 ath-u.5   AT3G21215   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ghi-r.1   107925052   cell wall integrity protein scw1 
 ghi-r.1   107910607   RNA-binding protein with multiple splicing 2 
 ghi-r.1   107951057   U1 small nuclear ribonucleoprotein A 
 cit-r.1   102624190   uncharacterized LOC102624190 
 gma-u.5   100817421   U1 small nuclear ribonucleoprotein A 
 gma-u.5   100797865   RNA-binding protein mde7 
 vvi-u.5   100263943   cell wall integrity protein scw1 
 ppo-u.5   7490860   uncharacterized LOC7490860 
 ppo-u.5   7491572   uncharacterized LOC7491572 
 mtr-u.5   11419461   RNA-binding protein, mRNA-processing factor 2a 
 sly-u.5   101266614   RNA-binding (RRM/RBD/RNP motifs) family protein 
 sot-r.1   102579827   RNA-binding protein with multiple splicing 
 nta-r.1   107771023   uncharacterized LOC107771023 
 nta-r.1   107762394   uncharacterized LOC107762394 
 osa-u.5   4345075   uncharacterized LOC4345075 
 zma-u.5   100283020   uncharacterized LOC100283020 
 tae-r.2   123156669   RNA-binding protein mde7 
 tae-r.2   123164155   U1 small nuclear ribonucleoprotein A 
 tae-r.2   123154627   RNA-binding protein mde7 
 hvu-r.1   123407378   RNA-binding protein mde7 
 sbi-r.1   8073260   RNA-binding protein mde7 
 bdi-r.1   100829014   RNA-binding protein mde7 
 cre-r.1   CHLRE_08g364700v5   uncharacterized protein 
 cre-r.1   CHLRE_15g643703v5   uncharacterized protein 

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Top 50 coexpressed genes to 125580232 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 125580232 (bna-r.1 coexpression data)

CoexMap"125580232"


bnaLOC125580232 | Entrez gene ID : 125580232    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 1 1 3 1 2 1 2 1 1 1 2 1 1 3 1 1 1 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003729 [list] [network] mRNA binding  (918 genes)  IEA  
Protein XP_048600414.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  chlo 2  (predict for XP_048600414.1)
Subcellular
localization
TargetP
other 7  (predict for XP_048600414.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
125580232
bna-r.1
for
106365601
bna-r.1
for
106376916
bra-r.6
for
103835330
ath-u.5
for
AT3G21215
ghi-r.1
for
107925052
ghi-r.1
for
107910607
ghi-r.1
for
107951057
cit-r.1
for
102624190
gma-u.5
for
100817421
gma-u.5
for
100797865
vvi-u.5
for
100263943
ppo-u.5
for
7490860
ppo-u.5
for
7491572
mtr-u.5
for
11419461
sly-u.5
for
101266614
sot-r.1
for
102579827
nta-r.1
for
107771023
nta-r.1
for
107762394
osa-u.5
for
4345075
zma-u.5
for
100283020
tae-r.2
for
123156669
tae-r.2
for
123164155
tae-r.2
for
123154627
hvu-r.1
for
123407378
sbi-r.1
for
8073260
bdi-r.1
for
100829014
cre-r.1
for
CHLRE_08g364700v5
cre-r.1
for
CHLRE_15g643703v5


Ortholog ID: 7588
Species bna bna bna bra ath ghi ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre cre
Symbol LOC125580232 LOC106365601 LOC106376916 LOC103835330 AT3G21215 LOC107925052 LOC107910607 LOC107930408 LOC102624190 LOC100817421 LOC100797865 LOC100263943 LOC7490860 LOC7491572 LOC11419461 LOC101266614 LOC102579827 LOC107771023 LOC107762394 LOC4345075 LOC100283020 LOC123156669 LOC123164155 LOC123154627 LOC123407378 LOC8073260 LOC100829014 CHLRE_08g364700v5 CHLRE_15g643703v5
Function* U1 small nuclear ribonucleoprotein A-like RNA-binding protein, mRNA-processing factor 2a RNA-binding protein, mRNA-processing factor 2a RNA-binding protein with multiple splicing RNA-binding (RRM/RBD/RNP motifs) family protein cell wall integrity protein scw1 RNA-binding protein with multiple splicing 2 cell wall integrity protein scw1 uncharacterized LOC102624190 U1 small nuclear ribonucleoprotein A RNA-binding protein mde7 cell wall integrity protein scw1 uncharacterized LOC7490860 uncharacterized LOC7491572 RNA-binding protein, mRNA-processing factor 2a RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding protein with multiple splicing uncharacterized LOC107771023 uncharacterized LOC107762394 uncharacterized LOC4345075 uncharacterized LOC100283020 RNA-binding protein mde7 U1 small nuclear ribonucleoprotein A RNA-binding protein mde7 RNA-binding protein mde7 RNA-binding protein mde7 RNA-binding protein mde7 uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
bna03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
bna03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 7
ppo03013 Nucleocytoplasmic transport 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
ppo03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 2
sly03040 Spliceosome 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 7
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 3
tae03015 mRNA surveillance pathway 2
tae00960 Tropane, piperidine and pyridine alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00960 Tropane, piperidine and pyridine alkaloid biosynthesis 3
tae03022 Basal transcription factors 3
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 3
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 8
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 125580232 106365601 106376916 103835330 821675 107925052 107910607 107930408 102624190 100817421 100797865 100263943 7490860 7491572 11419461 101266614 102579827 107771023 107762394 4345075 100283020 123156669 123164155 123154627 123407378 8073260 100829014 5721640 5726262
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