ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	106381776	transcription elongation factor 1 homolog
bna-r.1	106436373	transcription elongation factor 1 homolog
bna-r.1	106436357	transcription elongation factor 1 homolog
bna-r.1	106382456	transcription elongation factor 1 homolog
bra-r.6	103853681	transcription elongation factor 1 homolog
bra-r.6	103827760	transcription elongation factor 1 homolog
ath-u.5	AT5G46030	transcription elongation factor-like protein
ghi-r.1	107960221	transcription elongation factor 1 homolog
ghi-r.1	107943300	transcription elongation factor 1 homolog
ghi-r.1	107941193	transcription elongation factor 1 homolog
cit-r.1	102628584	transcription elongation factor 1 homolog
gma-u.5	100781562	transcription elongation factor 1 homolog
gma-u.5	100778262	transcription elongation factor 1 homolog
vvi-u.5	100253769	transcription elongation factor 1 homolog
vvi-u.5	100246889	transcription elongation factor 1 homolog
ppo-u.5	7485139	transcription elongation factor 1 homolog
ppo-u.5	18110184	transcription elongation factor 1 homolog
mtr-u.5	25493060	transcription elongation factor 1 homolog
sly-u.5	101268159	transcription elongation factor 1 homolog
sly-u.5	101252629	transcription elongation factor 1 homolog
sot-r.1	102579579	transcription elongation factor 1 homolog
sot-r.1	102587866	transcription elongation factor 1 homolog
sot-r.1	102585461	transcription elongation factor 1 homolog
nta-r.1	107759182	transcription elongation factor 1 homolog
nta-r.1	107769561	transcription elongation factor 1 homolog
nta-r.1	107794612	transcription elongation factor 1 homolog
osa-u.5	4328219	transcription elongation factor 1 homolog
osa-u.5	4343996	transcription elongation factor 1 homolog
cre-r.1	CHLRE_17g702550v5	uncharacterized protein

Top 50 coexpressed genes to 106381776 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 106381776 (bna-r.1 coexpression data)

CoexMap"106381776"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006368 [list] [network] transcription elongation by RNA polymerase II

(46 genes)

IEA

GO CC

GO:0008023 [list] [network] transcription elongation factor complex

(79 genes)

IEA

GO MF

GO:0000993 [list] [network] RNA polymerase II complex binding

(46 genes)

IEA

Protein

XP_013677167.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 3, mito 3, chlo_mito 3, nucl 1, cyto 1, extr 1, cyto_nucl 1, cyto_mito 1, mito_plas 1

(predict for XP_013677167.1)

Subcellular
localization
TargetP

mito 4, other 4

(predict for XP_013677167.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106381776	bna-r.1 for 106436373	bna-r.1 for 106436357	bna-r.1 for 106382456	bra-r.6 for 103853681	bra-r.6 for 103827760	ath-u.5 for AT5G46030	ghi-r.1 for 107960221	ghi-r.1 for 107943300	ghi-r.1 for 107941193	cit-r.1 for 102628584	gma-u.5 for 100781562	gma-u.5 for 100778262	vvi-u.5 for 100253769	vvi-u.5 for 100246889	ppo-u.5 for 7485139	ppo-u.5 for 18110184	mtr-u.5 for 25493060	sly-u.5 for 101268159	sly-u.5 for 101252629	sot-r.1 for 102579579	sot-r.1 for 102587866	sot-r.1 for 102585461	nta-r.1 for 107759182	nta-r.1 for 107769561	nta-r.1 for 107794612	osa-u.5 for 4328219	osa-u.5 for 4343996	cre-r.1 for CHLRE_17g702550v5

Ortholog

Ortholog ID: 1438

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

tae

sbi

bdi

cre

Symbol

Function^*

transcription elongation factor 1 homolog

transcription elongation factor-like protein

transcription elongation factor 1 homolog

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00770	Pantothenate and CoA biosynthesis	2
bna01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	3
bna03250	Viral life cycle - HIV-1	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00770	Pantothenate and CoA biosynthesis	2
bna01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03020	RNA polymerase	3
ath03420	Nucleotide excision repair	3
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04136	Autophagy - other	2
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3
gma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04144	Endocytosis	2
vvi03018	RNA degradation	2
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	3
ppo04141	Protein processing in endoplasmic reticulum	3
ppo03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	5
mtr03020	RNA polymerase	2
mtr03420	Nucleotide excision repair	2
mtr03083	Polycomb repressive complex	2
mtr04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03018	RNA degradation	2
sly03040	Spliceosome	2
sly03020	RNA polymerase	2
sly03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04136	Autophagy - other	3
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	5
sot03083	Polycomb repressive complex	4
sot04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2
sot03022	Basal transcription factors	2
sot03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	2
nta04145	Phagosome	2
nta04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	2
nta04145	Phagosome	2
nta04148	Efferocytosis	2
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	5
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04136	Autophagy - other	4
tae04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	6
cre04814	Motor proteins	3

Expression

Expression pattern

Entrez Gene ID^*

106436373

106436357

106382456

103853681

103827760

834644

107941193

107962965

102628584

100781562

100778262

100253769

100246889

7485139

18110184

25493060

101268159

101252629

102579579

102587866

102585461

107759182

107794612

107794856

4328219

4343996

123147824

123069449

8069161

100837462

5717278

The preparation time of this page was 0.2 [sec].


Species	bna	bra	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	cre	bdi	tae	zma	sbi	hvu
Paralog	4	2	1	3	1	2	2	2	1	2	3	3	2	1	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106381776 (bna-r.1 coexpression data)

Top 50 enrichment test to 106381776 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**