ATTED-II : GeneCoexpression result

Species	Gene	Description
bna-r.1	106398703	RNA-binding protein CP29B, chloroplastic
ath-u.5	AT2G37220	RNA-binding (RRM/RBD/RNP motifs) family protein
ath-u.5	CP29	chloroplast RNA-binding protein 29
gma-u.5	100812934	ribonucleoprotein At2g37220, chloroplastic-like
gma-u.5	100786275	RNA-binding (RRM/RBD/RNP motifs) family protein
vvi-u.5	100246501	29 kDa ribonucleoprotein A, chloroplastic
ppo-u.5	7486483	RNA-binding protein CP29B, chloroplastic
ppo-u.5	18100185	RNA-binding protein CP29B, chloroplastic
mtr-u.5	11433272	29 kDa ribonucleoprotein A, chloroplastic
sly-u.5	101245790	29 kDa ribonucleoprotein A, chloroplastic
sly-u.5	101255645	29 kDa ribonucleoprotein B, chloroplastic
osa-u.5	4332957	RNA-binding protein CP29B, chloroplastic
osa-u.5	4344001	29 kDa ribonucleoprotein A, chloroplastic
zma-u.5	100285364	uncharacterized LOC100285364
zma-u.5	100282223	uncharacterized LOC100282223
zma-u.5	100274547	uncharacterized LOC100274547

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005829 [list] [network] cytosol

(3196 genes)

IEA

GO MF

GO:0003729 [list] [network] mRNA binding

(918 genes)

IEA

Protein

XP_013694669.2 [sequence] [blastp]

Subcellular
localization
wolf

chlo 10

(predict for XP_013694669.2)

Subcellular
localization
TargetP

chlo 9

(predict for XP_013694669.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106398703	ath-u.5 for AT2G37220	ath-u.5 for CP29	gma-u.5 for 100812934	gma-u.5 for 100786275	vvi-u.5 for 100246501	ppo-u.5 for 7486483	ppo-u.5 for 18100185	mtr-u.5 for 11433272	sly-u.5 for 101245790	sly-u.5 for 101255645	osa-u.5 for 4332957	osa-u.5 for 4344001	zma-u.5 for 100285364	zma-u.5 for 100282223	zma-u.5 for 100274547

Ortholog

Ortholog ID: 3319

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

CP29

Function^*

RNA-binding protein CP29B, chloroplastic

29 kDa ribonucleoprotein, chloroplastic

RNA-binding protein CP29B, chloroplastic

RNA-binding (RRM/RBD/RNP motifs) family protein

chloroplast RNA-binding protein 29

29 kDa ribonucleoprotein A, chloroplastic

RNA-binding protein CP29B, chloroplastic

RNA-binding (RRM/RBD/RNP motifs) family protein

ribonucleoprotein At2g37220, chloroplastic-like

29 kDa ribonucleoprotein A, chloroplastic

RNA-binding protein CP29B, chloroplastic

29 kDa ribonucleoprotein A, chloroplastic

29 kDa ribonucleoprotein B, chloroplastic

single-stranded DNA binding protein precursor

29 kDa ribonucleoprotein B, chloroplastic-like

29 kDa ribonucleoprotein B, chloroplastic

31 kDa ribonucleoprotein, chloroplastic

RNA-binding protein CP29B, chloroplastic

29 kDa ribonucleoprotein A, chloroplastic

uncharacterized LOC100282223

uncharacterized LOC100274547

29 kDa ribonucleoprotein A, chloroplastic

RNA-binding protein CP29B, chloroplastic

RNA-binding protein CP29B, chloroplastic-like

29 kDa ribonucleoprotein A, chloroplastic-like

RNA-binding protein CP29B, chloroplastic

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00340	Histidine metabolism	2
bna01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01240	Biosynthesis of cofactors	3
vvi03010	Ribosome	2
vvi00730	Thiamine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	5
sot04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00020	Citrate cycle (TCA cycle)	2
sot00270	Cysteine and methionine metabolism	2
sot00566	Sulfoquinovose metabolism	2
sot00620	Pyruvate metabolism	2
sot00630	Glyoxylate and dicarboxylate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01240	Biosynthesis of cofactors	2
zma03060	Protein export	2
zma03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00860	Porphyrin metabolism	3
hvu03018	RNA degradation	2
hvu03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00860	Porphyrin metabolism	2
bdi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03018	RNA degradation	3
bdi00860	Porphyrin metabolism	2
bdi01240	Biosynthesis of cofactors	2

Expression

Expression pattern

Entrez Gene ID^*

106441071

106366108

103857667

103867216

818299

824514

107948368

107889598

102621789

100786275

100812934

100246501

7486483

18100185

11433272

101245790

101255645

102577524

102585227

107792669

107814688

4332957

4344001

100282223

100274547

123044103

123092005

123448659

123425182

8079368

8080763

100832013

100826795

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 106398703 (bna-r.1 coexpression data)

Top 50 enrichment test to 106398703 (bna-r.1 coexpression data)


Species	bna	ath	gma	vvi	ppo	mtr	sly	osa	zma	hvu	cit	bra	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	1	2	2	1	2	1	2	2	3	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106398703 (bna-r.1 coexpression data)

Top 50 enrichment test to 106398703 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**