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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106405929   proteasome subunit alpha type-1-B 
 ath-u.5   PAF1   proteasome alpha subunit F1 
 ath-u.5   PAF2   20S proteasome alpha subunit F2 
 gma-u.5   100797380   proteasome subunit alpha type-1-A 
 gma-u.5   100819051   proteasome subunit alpha type-1-B 
 gma-u.5   100792921   proteasome subunit alpha type-1-B 
 vvi-u.5   100257364   proteasome subunit alpha type-1-B 
 ppo-u.5   7477623   proteasome subunit alpha type-1-B 
 ppo-u.5   7471943   proteasome subunit alpha type-1-A 
 mtr-u.5   25482164   proteasome subunit alpha type-1-B 
 mtr-u.5   11428880   proteasome subunit alpha type-1-B 
 sly-u.5   101266633   proteasome subunit alpha type-1-A 
 osa-u.5   4328215   proteasome subunit alpha type-1-like 
 zma-u.5   100282706   proteasome subunit alpha type 1 

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Top 50 coexpressed genes to 106405929 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106405929 (bna-r.1 coexpression data)

CoexMap"106405929"


bnaLOC106405929 | Entrez gene ID : 106405929    
Species bna ath gma vvi ppo mtr sly osa zma hvu cit bra ghi sbi bdi nta tae cre sot
Paralog 1 2 3 1 2 2 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03050 [list] [network] Proteasome (219 genes)
GO BP
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (910 genes)  IEA  
GO CC
GO:0019773 [list] [network] proteasome core complex, alpha-subunit complex  (41 genes)  IEA  
GO:0005839 [list] [network] proteasome core complex  (94 genes)  IEA  
GO MF
Protein XP_013701940.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  nucl 2,  nucl_plas 2,  cysk_nucl 1,  chlo 1  (predict for XP_013701940.2)
Subcellular
localization
TargetP
other 8,  mito 4  (predict for XP_013701940.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106405929
ath-u.5
for
PAF1
ath-u.5
for
PAF2
gma-u.5
for
100797380
gma-u.5
for
100819051
gma-u.5
for
100792921
vvi-u.5
for
100257364
ppo-u.5
for
7477623
ppo-u.5
for
7471943
mtr-u.5
for
25482164
mtr-u.5
for
11428880
sly-u.5
for
101266633
osa-u.5
for
4328215
zma-u.5
for
100282706


Ortholog ID: 4627
Species bna bna bra bra ath ath ghi ghi cit gma gma vvi ppo ppo mtr mtr sly sot sot nta nta osa zma tae tae hvu sbi bdi cre
Symbol LOC106371863 LOC106405929 LOC103839280 LOC103848568 PAF2 PAF1 LOC107957580 LOC107922006 LOC102617944 LOC100792921 LOC100819051 LOC100257364 LOC7471943 LOC7477623 LOC11428880 LOC25482164 LOC101266633 LOC102597919 LOC102592412 LOC107819554 LOC107822157 LOC4328215 LOC100282706 LOC123136109 LOC123132080 LOC123404604 LOC8069936 LOC100843181 CHLRE_06g304300v5
Function* proteasome subunit alpha type-1-B proteasome subunit alpha type-1-B proteasome subunit alpha type-1-A proteasome subunit alpha type-1-A 20S proteasome alpha subunit F2 proteasome alpha subunit F1 proteasome subunit alpha type-1-B proteasome subunit alpha type-1-A-like proteasome subunit alpha type-1-B proteasome subunit alpha type-1-B proteasome subunit alpha type-1-B proteasome subunit alpha type-1-B proteasome subunit alpha type-1-A proteasome subunit alpha type-1-B proteasome subunit alpha type-1-B proteasome subunit alpha type-1-B proteasome subunit alpha type-1-A proteasome subunit alpha type-1-B-like proteasome subunit alpha type-1-B-like proteasome subunit alpha type-1-A proteasome subunit alpha type-1-B proteasome subunit alpha type-1-like proteasome subunit alpha type 1 proteasome subunit alpha type-1 proteasome subunit alpha type-1 proteasome subunit alpha type-1 proteasome subunit alpha type-1 proteasome subunit alpha type-1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 17
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 8
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 8
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi04146 Peroxisome 2
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 13
ppo03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 11
mtr04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 14
mtr04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 16
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 12
sot04141 Protein processing in endoplasmic reticulum 2
sot00591 Linoleic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 8
nta03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 11
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
nta01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 14
tae00020 Citrate cycle (TCA cycle) 3
tae00190 Oxidative phosphorylation 3
tae01200 Carbon metabolism 3
tae04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 14
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 11
hvu03018 RNA degradation 2
hvu04141 Protein processing in endoplasmic reticulum 2
hvu00020 Citrate cycle (TCA cycle) 2
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 6
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 14
cre04141 Protein processing in endoplasmic reticulum 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106371863 106405929 103839280 103848568 841128 834290 107957580 107922006 102617944 100792921 100819051 100257364 7471943 7477623 11428880 25482164 101266633 102597919 102592412 107819554 107822157 4328215 100282706 123136109 123132080 123404604 8069936 100843181 5716914
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