ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	106412138	uncharacterized LOC106412138
bna-r.1	BNACNNG22340D	uncharacterized BNACNNG22340D
bna-r.1	106441229	uncharacterized LOC106441229
bra-r.6	103847979	uncharacterized LOC103847979
bra-r.6	103860408	uncharacterized LOC103860408
bra-r.6	103837613	uncharacterized LOC103837613
ath-u.5	AT2G14850	transcriptional regulator of RNA polII, SAGA, subunit
ath-u.5	AT4G33890	transcriptional regulator of RNA polII, SAGA, subunit
ghi-r.1	121215292	uncharacterized LOC121215292
ghi-r.1	107945361	uncharacterized LOC107945361
ghi-r.1	107934161	uncharacterized LOC107934161
cit-r.1	102613591	uncharacterized LOC102613591
cit-r.1	102610114	uncharacterized LOC102610114
gma-u.5	100809982	uncharacterized LOC100809982
gma-u.5	100816491	uncharacterized LOC100816491
gma-u.5	100817344	uncharacterized LOC100817344
vvi-u.5	100257838	uncharacterized LOC100257838
vvi-u.5	100256708	uncharacterized LOC100256708
ppo-u.5	7465064	uncharacterized LOC7465064
ppo-u.5	7478729	uncharacterized LOC7478729
mtr-u.5	25485354	uncharacterized LOC25485354
mtr-u.5	11407762	uncharacterized LOC11407762
sly-u.5	101245817	uncharacterized LOC101245817
sot-r.1	102590394	uncharacterized LOC102590394
sot-r.1	102590988	uncharacterized LOC102590988
nta-r.1	107818066	uncharacterized LOC107818066
nta-r.1	107804633	uncharacterized LOC107804633
nta-r.1	107792555	uncharacterized LOC107792555
osa-u.5	4334203	uncharacterized LOC4334203
osa-u.5	4352635	uncharacterized LOC4352635
zma-u.5	100273788	transcriptional regulator of RNA polII SAGA subunit
zma-u.5	103650260	transcriptional regulator of RNA polII SAGA subunit
zma-u.5	100216774	uncharacterized LOC100216774
tae-r.2	123086861	uncharacterized LOC123086861
tae-r.2	123096122	uncharacterized LOC123096122
tae-r.2	123102429	uncharacterized LOC123102429
hvu-r.1	123452491	uncharacterized LOC123452491
hvu-r.1	123447775	uncharacterized LOC123447775
sbi-r.1	8068139	uncharacterized LOC8068139
sbi-r.1	8086197	uncharacterized LOC8086197
bdi-r.1	100830991	uncharacterized LOC100830991

Top 50 coexpressed genes to 106412138 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 106412138 (bna-r.1 coexpression data)

CoexMap"106412138"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006357 [list] [network] regulation of transcription by RNA polymerase II

(1371 genes)

IEA

GO CC

GO:0000124 [list] [network] SAGA complex

(54 genes)

IEA

GO MF

GO:0003713 [list] [network] transcription coactivator activity

(127 genes)

IEA

Protein

XP_013708486.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9

(predict for XP_013708486.1)

Subcellular
localization
TargetP

other 8

(predict for XP_013708486.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106412138	bna-r.1 for BNACNNG22340D	bna-r.1 for 106441229	bra-r.6 for 103847979	bra-r.6 for 103860408	bra-r.6 for 103837613	ath-u.5 for AT2G14850	ath-u.5 for AT4G33890	ghi-r.1 for 121215292	ghi-r.1 for 107945361	ghi-r.1 for 107934161	cit-r.1 for 102613591	cit-r.1 for 102610114	gma-u.5 for 100809982	gma-u.5 for 100816491	gma-u.5 for 100817344	vvi-u.5 for 100257838	vvi-u.5 for 100256708	ppo-u.5 for 7465064	ppo-u.5 for 7478729	mtr-u.5 for 25485354	mtr-u.5 for 11407762	sly-u.5 for 101245817	sot-r.1 for 102590394	sot-r.1 for 102590988	nta-r.1 for 107818066	nta-r.1 for 107804633	nta-r.1 for 107792555	osa-u.5 for 4334203	osa-u.5 for 4352635	zma-u.5 for 100273788	zma-u.5 for 103650260	zma-u.5 for 100216774	tae-r.2 for 123086861	tae-r.2 for 123096122	tae-r.2 for 123102429	hvu-r.1 for 123452491	hvu-r.1 for 123447775	sbi-r.1 for 8068139	sbi-r.1 for 8086197	bdi-r.1 for 100830991

Ortholog

Ortholog ID: 2123

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

uncharacterized BNACNNG22340D

uncharacterized LOC106441229

uncharacterized BNAA03G38720D

uncharacterized LOC103847979

uncharacterized LOC103862273

transcriptional regulator of RNA polII, SAGA, subunit

uncharacterized LOC121215292

uncharacterized LOC107913271

uncharacterized LOC102613591

uncharacterized LOC102610114

uncharacterized LOC100816491

uncharacterized LOC100817344

uncharacterized LOC100810002

uncharacterized LOC100257838

uncharacterized LOC100256708

uncharacterized LOC7465064

uncharacterized LOC18102087

uncharacterized LOC25485354

uncharacterized LOC11407762

uncharacterized LOC101245817

uncharacterized LOC102590394

uncharacterized LOC102590988

uncharacterized LOC107818066

uncharacterized LOC107792555

uncharacterized LOC107771260

uncharacterized LOC4334203

uncharacterized LOC4352635

transcriptional regulator of RNA polII SAGA subunit

uncharacterized LOC100216774

uncharacterized LOC123086861

uncharacterized LOC123096122

uncharacterized LOC123119630

uncharacterized LOC123452491

uncharacterized LOC123447775

uncharacterized LOC8068139

uncharacterized LOC8086197

uncharacterized LOC100830991

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03022	Basal transcription factors	2
gma04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04016	MAPK signaling pathway - plant	3
sly04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03060	Protein export	3
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
nta01240	Biosynthesis of cofactors	2
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	3
nta04016	MAPK signaling pathway - plant	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04016	MAPK signaling pathway - plant	4
nta04075	Plant hormone signal transduction	4
nta04120	Ubiquitin mediated proteolysis	2
nta04141	Protein processing in endoplasmic reticulum	2
nta04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2
hvu04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00510	N-Glycan biosynthesis	2
sbi00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00520	Amino sugar and nucleotide sugar metabolism	2
sbi01250	Biosynthesis of nucleotide sugars	2

Expression

Expression pattern

Entrez Gene ID^*

106410504

106441229

106439734

103847979

103862273

815974

829532

121215292

107913271

102613591

102610114

100816491

100817344

100810002

100257838

100256708

7465064

18102087

25485354

11407762

101245817

102590394

102590988

107818066

107792555

107771260

4334203

4352635

100273788

103650260

100216774

123086861

123096122

123119630

123452491

123447775

8068139

8086197

100830991

The preparation time of this page was 0.3 [sec].


Species	bna	bra	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	3	2	3	2	3	2	2	2	1	2	3	2	3	3	2	2	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106412138 (bna-r.1 coexpression data)

Top 50 enrichment test to 106412138 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**