ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-u.5	TDP1	tyrosyl-DNA phosphodiesterase-like protein
gma-u.5	100793746	tyrosyl-DNA phosphodiesterase 1
vvi-u.5	100247070	tyrosyl-DNA phosphodiesterase 1
ppo-u.5	7479095	tyrosyl-DNA phosphodiesterase 1
mtr-u.5	11437867	tyrosyl-DNA phosphodiesterase 1
sly-u.5	101257338	tyrosyl-DNA phosphodiesterase 1
osa-u.5	4343446	tyrosyl-DNA phosphodiesterase 1
zma-u.5	100383136	Tyrosyl-DNA phosphodiesterase 1

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0005515 [list] [network] protein binding

(12789 genes)

IEA

Protein

XP_013713068.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 3, cyto 2, mito 2, plas 1, extr 1, cysk 1, golg 1, golg_plas 1, cysk_plas 1

(predict for XP_013713068.1)

Subcellular
localization
TargetP

chlo 9, other 3

(predict for XP_013713068.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for TDP1	gma-u.5 for 100793746	vvi-u.5 for 100247070	ppo-u.5 for 7479095	mtr-u.5 for 11437867	sly-u.5 for 101257338	osa-u.5 for 4343446	zma-u.5 for 100383136

Ortholog ID: 10300

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

TDP1

Function^*

tyrosyl-DNA phosphodiesterase 1

tyrosyl-DNA phosphodiesterase-like protein

tyrosyl-DNA phosphodiesterase 1

Tyrosyl-DNA phosphodiesterase 1

tyrosyl-DNA phosphodiesterase 1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	5
bna03420	Nucleotide excision repair	4
bna03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	2
ghi03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	2
ghi03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01230	Biosynthesis of amino acids	3
gma00220	Arginine biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	4
nta03015	mRNA surveillance pathway	2
nta03040	Spliceosome	2
nta03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03410	Base excision repair	3
tae03430	Mismatch repair	2
tae03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03460	Fanconi anemia pathway	4
tae03410	Base excision repair	3
tae03020	RNA polymerase	3
tae03430	Mismatch repair	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03410	Base excision repair	4
bdi03450	Non-homologous end-joining	3

Expression

Expression pattern

Entrez Gene ID^*

106431855

103856120

831369

107935343

107924901

102627995

100793746

100247070

7479095

11437867

101257338

102604923

107791644

107813187

4343446

100383136

123044642

123188400

123425840

8080148

100840189

5715790

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to TDP1 (ath-u.5 coexpression data)

Top 50 enrichment test to TDP1 (ath-u.5 coexpression data)


Species	ath	gma	vvi	ppo	mtr	sly	osa	zma	hvu	bna	cit	bra	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to TDP1 (ath-u.5 coexpression data)

Top 50 enrichment test to TDP1 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**