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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106431855   tyrosyl-DNA phosphodiesterase 1 
 ath-u.5   TDP1   tyrosyl-DNA phosphodiesterase-like protein 
 gma-u.5   100793746   tyrosyl-DNA phosphodiesterase 1 
 vvi-u.5   100247070   tyrosyl-DNA phosphodiesterase 1 
 ppo-u.5   7479095   tyrosyl-DNA phosphodiesterase 1 
 mtr-u.5   11437867   tyrosyl-DNA phosphodiesterase 1 
 sly-u.5   101257338   tyrosyl-DNA phosphodiesterase 1 
 osa-u.5   4343446   tyrosyl-DNA phosphodiesterase 1 
 zma-u.5   100383136   Tyrosyl-DNA phosphodiesterase 1 

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Top 50 coexpressed genes to 106431855 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106431855 (bna-r.1 coexpression data)

CoexMap"106431855"


bnaLOC106431855 | Entrez gene ID : 106431855    
Species bna ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae ghi
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03410 [list] [network] Base excision repair (126 genes)
GO BP
GO:0000012 [list] [network] single strand break repair  (6 genes)  IEA  
GO:0006302 [list] [network] double-strand break repair  (365 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
GO:0017005 [list] [network] 3'-tyrosyl-DNA phosphodiesterase activity  (2 genes)  IEA  
GO:0003697 [list] [network] single-stranded DNA binding  (274 genes)  IEA  
GO:0003690 [list] [network] double-stranded DNA binding  (1590 genes)  IEA  
GO:0005515 [list] [network] protein binding  (12789 genes)  IEA  
Protein XP_013728150.2 [sequence] [blastp]
XP_022567364.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  chlo 4,  cyto 1,  mito 1  (predict for XP_013728150.2)
chlo 4,  nucl 3,  cyto 3,  cyto_nucl 3  (predict for XP_022567364.2)
Subcellular
localization
TargetP
chlo 6,  other 3  (predict for XP_013728150.2)
chlo 6,  other 3  (predict for XP_022567364.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106431855

.
ath-u.5
for
TDP1

.
gma-u.5
for
100793746

.
vvi-u.5
for
100247070

.
ppo-u.5
for
7479095

.
mtr-u.5
for
11437867

.
sly-u.5
for
101257338

.
osa-u.5
for
4343446

.
zma-u.5
for
100383136

.


Ortholog ID: 10300
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna cre sbi sot cit bdi nta nta
Symbol TDP1 LOC100793746 LOC101257338 LOC4343446 LOC100383136 LOC103856120 LOC100247070 LOC7479095 LOC11437867 LOC123044642 LOC123188400 LOC123425840 LOC107935343 LOC107924901 LOC106431855 CHLRE_01g053200v5 LOC8080148 LOC102604923 LOC102627995 LOC100840189 LOC107791644 LOC107813187
Function* tyrosyl-DNA phosphodiesterase-like protein tyrosyl-DNA phosphodiesterase 1 tyrosyl-DNA phosphodiesterase 1 tyrosyl-DNA phosphodiesterase 1 Tyrosyl-DNA phosphodiesterase 1 tyrosyl-DNA phosphodiesterase 1 tyrosyl-DNA phosphodiesterase 1 tyrosyl-DNA phosphodiesterase 1 tyrosyl-DNA phosphodiesterase 1 tyrosyl-DNA phosphodiesterase 1 tyrosyl-DNA phosphodiesterase 1 tyrosyl-DNA phosphodiesterase 1 tyrosyl-DNA phosphodiesterase 1 tyrosyl-DNA phosphodiesterase 1 tyrosyl-DNA phosphodiesterase 1 uncharacterized protein tyrosyl-DNA phosphodiesterase 1 tyrosyl-DNA phosphodiesterase 1 tyrosyl-DNA phosphodiesterase 1 tyrosyl-DNA phosphodiesterase 1 tyrosyl-DNA phosphodiesterase 1 tyrosyl-DNA phosphodiesterase 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 3
gma00220 Arginine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03410 Base excision repair 3
tae03430 Mismatch repair 2
tae03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03460 Fanconi anemia pathway 4
tae03410 Base excision repair 3
tae03020 RNA polymerase 3
tae03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 5
bna03420 Nucleotide excision repair 4
bna03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03410 Base excision repair 4
bdi03450 Non-homologous end-joining 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 4
nta03015 mRNA surveillance pathway 2
nta03040 Spliceosome 2
nta03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831369 100793746 101257338 4343446 100383136 103856120 100247070 7479095 11437867 123044642 123188400 123425840 107935343 107924901 106431855 5715790 8080148 102604923 102627995 100840189 107791644 107813187
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